Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_06 |
Marker Type | SSR |
Map Position | 60.7 |
Annotation | |
Source Name | emf11C06 |
Source Type | genomic |
Source Sequence | GAACAAACAAGAGTTTGCTCATGTCCAAAACAAAGAATTT TGCTAGCATCAAGCATCTCGTAGAACATATAAATCGGCAA TTATACATGGGCCTCTTCATATTCACAACAAAACGTAGAC ACGAATAACACAAGAGAGAGAGAGAGAGAGAGAGATATGG AAAGCGCCTATAACTGTATGGACAAACATAGCCTGGGATA CGTGAGTTTGGCTCTGCAGCCCCATCATTTTGTTGTTGGA GTTTTCGGGGTAGCATATTTCAGGCTTCTGCTAGCAAGCC TTAAACA |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)11 |
---|---|
PCR product (bp) | 156 |
fwd primer | emf11C06/U |
fwd primer seq. | tgggcctcttcatattcacaacaa |
rev primer | emf11C06/L |
rev primer seq. | aactccaacaacaaaatgatgggg |
fluor. primer | emf11C06/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-agggcctcttcatattcacaacaa |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 163 | 163 |
EPL-1 | 163 | 163 |
LS1151 (S.linneanum) | 178 | 178 |
LS1934 | 157 | 157 |
LS4021 (S. incanum) | ||
Nakate Shinkuro | 163 | 163 |
Senryo 2 | 163 | 163 |
Shironasu | 163 | 163 |
WCGR112-8 | 163 | 163 |
White Egg | 155 | 155 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_06 | 60.7 |
LW2010 | E_06 | 69.0 |
LWA2010 | LWA_06 | 65.664 |
LWAE2012 | E_06 | 71.255 |
LWF2_2022 | E_06 | 83.1 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_EcoRI0112L07_T7_321169 Chromat_file:SL_EcoRI_112_L07-T7 SGN_GSS_ID:337995 (vector and quality trimmed) | 1e-20 |
EST Name | Species | Strain |
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