| Crop | eggplant |
|---|---|
| Population | LWF2_2022 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 35.9 |
| Annotation | |
| Source Name | OVL01K19C |
| Source Type | EST |
| Source Sequence | GGGGATCCTCAAAACAAAAAAACTATAGAAAGTGTTGTAG TTTCATTTAAATTATAGCCATGACCAAAAAAAATTCATTA TACTTTCTTATTTTCCTTCTCATCATTGCTTTAAACTTCA TTAATAGCTTAGCCACTTATCATAATTCTAATGATGATGA TAATACTGCAAAATGGTTACATATTTGGCCATTTTTTCCG CCACCACCACCACCATCAACCGGCTATTTTCCTAAATTTC CATTCACAAGATCGATATTTCCATGGCCGCGATTTTTGCC ACTTTTTTCCCCTAGTAATGAAAAAACTTTTGATCAGATA AGCTTCGTCAATAGTCAGAGTGTGTTGAAAAAGAAATCGT GTGCCTCGATCATTGAACGATGTATAGTTTGCGTTCATCG TAGATGTTTTTTGAACTATGGTTGTTGTGAGGTTATTGCT GAATTTGGTCATGAAGAATGCAACAAGTTTTATGAATATA TCATGATTAAAAATCAATGTGCAATTAGCCCATTAGCTGC TCCACCTCCTTCAACTTAAGAAAACTTTGTGAAATTATAT TGATGAGTTACTAAGTGTGTGTGTGTGTTTATGTGAGAAT AAATTGATAAAGTGATGGACTGTTAGTGAAAATTATCAAA TTATAGACTTATAGTGTATTGTGTTTCATGTCATTATGAT ATATATGTGCATATATATATATATATATAATCAATAAAGT GAAGTCTTGTTTAATACTAGAACATATGTGTGTGCTACTT CCTAGTCTCATTTATAAAAAAAAATATGTTTGGACTT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3tgtgca(ta)9 |
|---|---|
| PCR product (bp) | 272 |
| fwd primer | ecm039/U |
| fwd primer seq. | caattagcccattagctgctccac |
| rev primer | ecm039/L |
| rev primer seq. | aaatgagactaggaagtagcacacaca |
| fluor. primer | ecm039/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atattagcccattagctgctccac |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 277 | 277 |
| EPL-1 | 275 | 275 |
| LS1151 (S.linneanum) | ||
| LS1934 | 277 | 277 |
| LS4021 (S. incanum) | 286 | 286 |
| Nakate Shinkuro | 275 | 275 |
| Senryo 2 | 275 | 275 |
| Shironasu | 277 | 277 |
| WCGR112-8 | 275 | 275 |
| White Egg | 275 | 275 |
| PI 286106 | 277 | 277 |
| Population | Linkage Group | Position |
|---|---|---|
| LW2010 | E_12 | 31.4 |
| LWA2010 | LWA_12 | 29.388 |
| LWAE2012 | E_12 | 31.03 |
| LWF2_2022 | E_12 | 35.9 |
| N28F2 | E_12 | 24.1 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
