+Marker Data: SOL6055

Crop eggplant
Population LWF2_2022
Linkage Group E_12
Marker Type SNP
Map Position 29.7
Annotation
Source Name SEP04C06C
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document

Typing_Method Tm-Shift
Marker_Class SOL
STS_primer_fwd GCTGCAATTTTAGAAGCTGATGAGG
STS_primer_rev CCCTGTTAATGTTGTCCATTTCTCA
amplicon_seq NNNNNACTAACAAGTTTTGTTGTTCATCTGGTTTTTCATATTTGTATTGGTCTCTGACTAAATTCGAATTCGTGTCGAAAGATCGTGCGCTGGGGCTAANGCGCTTCCTAACAGGGTCCTAGTATATGGGCCTAACTAGAATTCGGGTTCACACTAACAAAGGTTATCATCTACAAGACTCGAACGAATTGAGACATCTAGTNAAGGAAGAAGACNNNNNNNNCACTCCACCACAAACTAACTGGATTATGGGTTGCCTTTATTTCATTCTTGTTCTTGACTAAGATTCCATTAATTATTATGTGATACATTGAGTGAAGCACTTCTTGTTGTGTGGTTAAGATTCTATTAGTGAGGTTGTACAATATGCCTAGAAAATACTACCCATTTTAGTGAATAAGTATTAGGTACCGTCAGTGCCAGAGGCAGAATTTTCACTAAGAAGTTCATCATTTACTGTATATACGTAAAAAAAAAAANCTGACGACCTTGTATATATAGTATGATTTTACGGAAAAGGGGGTGTGGATGAACCCCTTCCCACCCCCGCCATGTTATATAGTATATATAGTATCCTAATGCAACCATGTTCGAACTCGTGATCTATAGATCACATGCAAAGAGAACTTTACGGTTGTTTCAAGGCCCCTTTCTAATATTGTACAAGGAAAAATAATCTTAGTATCATGATACCAAATATGAAAAACCACCCTTATTAGTCAATTCCACCTTTTGACTGGATTTAACTTATATACACTGATAGCGTAAGAANTATTTACAATCATGTTTAATAACTTTCATATTATCAAATTCAATGGTGAAGGNATACTTGCANGATTTGGNTATACAAGCTCAGCAAAGTAGGGCAAGCCATAGAGAAAAATGATTTATCTGCTGCAAGTTCAGTTCTTGGCCAAAGCACTGATACAGATTGGGTCCNAGAAAGTTAATTCAGCATTCAACAAGGTAGTTTTTTTTTTTNCTAATCTTTCCCTTTCAAGCACATTTTTGTTTCNCATTGTCTATGTGCACTGAATATTATGTTCATCGCNTTGTTACAGTTTAGTGGTAGCGATGAGGAGAAGNCACAAGTCGATTCCTTCAATTCTTCGCTGTCTTCTCTAGTTTCATCAGGTAATGTTTTTGTTGAGACTCCAAATGATGACTATGGCTGCATTCTATCTCATATTTGGCCGCCCTCGAGTCACAAGCTAGAATATTTAAAAGATAAAGTAAACAAGAACTTCGGGTTATGTTCAACATATGCCTAAAGGTATGCCATTTGATGTAAAAAGAAACTCAACTCTCAACTATGTTGCTCGGACTCTCCAAAGATGTTGTTGCATTCGTGTCANATTCTCCAAAAATGCACTATTTTTGAAGGATTCTGTGAGCACCTGTCAGCATTTTTGCAGAGTTCGACCAACATAAACAATCAANATTATGTAAGTACACAATGTACTAAGATACAAGATCGAACAAAAGCATGGATATCAAATTCTATAGGTTAGATAGAGTGGTGACTGATAAAGTTGTGTCCATGTGACCAGGAGGTCAGGGCTTGTGGTCCAACCCCTCTTAGTGGTGTTTGTAAATTATTAGGTAGCGAGTCTTCACTTAAATCGGTTAGTCAACTAATTTCNN
SNP_position 1375
allele_1 T
allele_2 C
ASP_primer_S GCGGGCACAGGTGCTCACAGAATCCTTCAAAAA
ASP_primer_L GCGGGCAGGGCGGCACAGGTGCTCACAGAATCCTTCAACAG
Common_primer GACTCTCCAAAGATGTTGTTGCATTCG
enzyme Native Taq
dye SYBR Green I

Line allele-1 allele-2
AE-P03 T T
LS1934 T T
Nakate Shinkuro T T
WCGR112-8 C C

Population Linkage Group Position
LW2010 E_12 25.8
LWA2010 LWA_12 24.726
LWAE2012 E_12 25.536
LWF2_2022 E_12 29.7

DB Program Definition E-Value

EST Name Species Strain