+Marker Data: SOL3042

Crop eggplant
Population LWF2_2022
Linkage Group E_12
Marker Type SNP
Map Position 0.0
Annotation
Source Name YFR06J05A
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document

Typing_Method Tm-Shift
Marker_Class SOL
STS_primer_fwd CAAGGAAAAACCACCAGAACCACT
STS_primer_rev ACTCTTTGCTCTCCCTTCAAGCAA
amplicon_seq GCGTTGAGGTACTTGGATTTTTTAAAAAAATTTAATTGTATTTGAATTCATGAAGTTCCATTTTTGTAGATCTTGTGAGTTTACTGTTATTTGATGGATATTATGGTGCTGCTTTTGCTTAACATATTTGATTTTTTAGAAATGCTGAGTTTATCGGAAATAATCTCTCTACTAGGGGTGTGATGTAGGCGGATTGGGCTGAATTTGAGAATGTTAAAATGGGTTAAGTTGATAAATGGACCTGCTTAGATGTTACTCGGTTGAAATGAGCTAAAAATCGAGTCATAACCTAACTTGTCCAATTCTTACTGAGTTTGAAACTCTTAAGTTTTTTTTTTTNNAATAATTTATTTGAGTATCTAATAGTACTACAATAAAATATATCAAGTAAAAAAATGTTTTTTTTTGAAAAAAAATTTTCTCANGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGANNNNNNNNNNNGGTTGAGTAATAAAANTATGTTTACGAGTGCATCAATGACTGACATTCTGTTATTTTCTGCCAGGACGTAGGTTNATGGTTAGACGAANTAAATCTTGGCAGCTATCGTCAAATTTTCAAAGAAAATGGTGTTAATGGAGAGTATCTGGAGGGGATGTCCATGTTCACGACTGAACAAATTCTCCGGTTTATAAGAAGGTGCCACATGAAATGGGGAGACTTCATTACGTTGTGTAAGGAGCTGAGGCGGATAAAAGGTTCTTATAATCTGTCTNTCGGCTTACAAATGAAACCATATCTTTTTAGTTTCTCCATTCTCTTGATGTGAAGTTTGACAGCTTTCTTTATCCATATTTCCAGCGATATGATTACATTTTGTTATGTATTTTTGATCAGCTTTGAATAGTGACATACTCATGTTTCATTGTCATGCGAAAAACCCTTTTGGAGAACTTGAAGTTGATATTTATTCACTTGCCAGTATTATTTAATGGTTCTATAANGCTGCATGCATCTAGCTAATTATATGTATTCTCTTATGAATTCCTAGGTTTTTGTGCGCACGTTGTGATCTGGTCTTGTTCATAACATCTGACACTATTTACATTCTCTAAAACTCTTTACCTTAGTAAATCTCACGAGATCTGTNAAATCGTTGCTAGTGAGATNCTCCANNTTTTTTTGAGATAAAGGGAAGCTATTGAAGGGGAGCATTGGCGGCATTGATAAAGTTGCTGCCATGGTCCTGGTCACAGGTTTAAGCTGTGGAATGGCCTCTAGCAGAAATACTGGGTAAGGCTATGTAACAATAGACAACCCTTGTGGTCTGATTCTTCCCCGGACCCCATGCATTGCGGGAGTCTAGTGCACTGGGCGGCCCTTAAATGGGAAGCTATTGAGATACTTGACTGAATCTGCTGTTGCTTTTTAGGAATGAAGATGCTGCTATTCATGTACTATTTGCTAATGTCCTATAGTCTTATGATCAAAN
SNP_position 1952
allele_1 C
allele_2 G
ASP_primer_S GCGGGCTTCCTAAAAAGCAACAGCAGATTCAC
ASP_primer_L GCGGGCAGGGCGGCTTCCTAAAAAGCAACAGCAGATTCAG
Common_primer GGCCCTTAAATGGGAAGCTATTGAGA
enzyme Native Taq
dye SYBR Green I

Line allele-1 allele-2
AE-P03 G G
LS1934 G G
Nakate Shinkuro G G
WCGR112-8 C C

Population Linkage Group Position
LW2010 E_12 0.0
LWA2010 LWA_12 2.103
LWAE2012 E_12 0.456
LWF2_2022 E_12 0.0

DB Program Definition E-Value

EST Name Species Strain