+Marker Data: est_sep06j11

Crop eggplant
Population LWF2_2022
Linkage Group E_11
Marker Type SNP
Map Position 56.8
Annotation
Source Name SEP06J11
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document

Typing_Method Tm-Shift
Marker_Class EST-misc
STS_primer_fwd ccctcaatgcttcttgaacttgct
STS_primer_rev atggattgaaattgccacctatgc
amplicon_seq NNNNNNNNNNNNNNNNNNNNGGGCTGAAGTGGCTGCAAGAGGGGATCAGTCACAATTTTCTATGTGGTTGACGGGGGGAGGGCTCCCGGCTGAATGGGCAAAATATCTTGGGAGATCATTCAGATGTTTGTTGAGAAGGACTAGGGACTTGAGGTTGCGATACCAACTGGCTACCATTGCAACAGGGTTTATCGATGTTATTGATGCGTGCAATAAAGCATTTGATAAAATCCCTGAAAATGCTGGGCCTCTTGTCCTGAGGAAAGGTCATGGAGGAGGTTACCTTCCACTGATGTAATAAGAGACTCAACATGAGACCTCTTACAATCAGTGGCGGAATATACAGTTGTATATTATATCAGTTTCGAATTTTTGTCTGCCAAAGTTTAGCTTTTGTAGGAAGCAGACTGAATTTTTGAAGACACAACAGGTGATTAGTTCTGATGAGTTGATGATCTGCAAATTTTGGCATCATTTTATTTGTTAATTTGCGCAACTCTCCTGAACTGAGGCTGGGTAAAACTGATTGCAGTTTTGTTGTTTTAAAAGGAATGTACATTAGAGGACATGTAAAATGTTGTACAAAATTCTTTGTTGTAAGCATAGGTNNN
SNP_position 407
allele_1 A
allele_2 C
ASP_primer_S GCGGGCGTTGTGTCTTCAAAAATTCAGT
ASP_primer_L GCGGGCAGGGCGGCGTTGTGTCTTCAAAAATTCCGG
Common_primer TGCCAAAGTTTAGCTTTTGTAGGAAGC
enzyme Native Taq
dye SYBR Green I

Line allele-1 allele-2
AE-P03 C C
LS1934 C C
Nakate Shinkuro C C
WCGR112-8 A A

Population Linkage Group Position
LW2010 E_11 46.1
LWA2010 LWA_11 45.918
LWAE2012 E_11 57.74
LWF2_2022 E_11 56.8

DB Program Definition E-Value

EST Name Species Strain