+Marker Data: est_ped05e04

Crop eggplant
Population LWF2_2022
Linkage Group E_10
Marker Type SNP
Map Position 59.8
Annotation
Source Name PED05E04
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document
Typing_Method Tm-Shift
Marker_Class EST-misc
STS_primer_fwd CTTGGTGGGAGGGTCTCGATGAAG
STS_primer_rev CTGGATCGACTGGAGTTGCAGTAT
amplicon_seq NNAGGTAGTTCCTTANTACTCTCTTTGTTTCAATTTATTTGTTTGGTTTTGAGTTGATATGAAATTTAAGAAACTTTTGAATCGTGTCGTCTTAAATTAAAGATATGGAGAATGTATCAGAGTGACTTTTAATCCTGTAGTCATAAAGATGTCATGTGGAAATTTATAATTAAGGAGATACATTTTGTGAAATGGACTTGAAAGAAAAGTAAGACAATTAAATTGTAATGGAGGGAGTGTACAAGTTTTCTTTTTGTGTGTGTGTTCATTTGCATCTCTTGAGCTTGAGTTTGTGTGGCTTTTTGTCTTGCTACTGTTTTCCTTTTGAGATTTCGGAGAGAGTATTGTGTTTATTACACCTTCGTTATGTTTTATGAGTAGAAAAGGAAGAAACTTTTGATTGGGTATAATGGTTCTTAATTATTATTTTTTTTGAGTGTGCGCGCATTCATTTGCATCTGTTGACTTGAGTTTGTCTTTTTTCTTGCCACTGTTTCTCTTTTGAGATTTCGGACACAGTATTATGTTGATTATACCTTCATTATGTTCTGTTAAAGGAAGAAACTTTCAATTGGGTACAATGGTGCTTGATTCTTGCATCCTGATTGAATAATTACACCATAGGAAATCTGCTTTGCCTGTAATTTGGTGAGCAAATTGAATTCAGTATGTGTGCGATGTTTCTTTTCTTTGAATATCTTCATTCATTTGGAATCCACTGGAGTGTCTTGAGCATGTAATTACTGTTGCTTAAGGATCAGTAACTACATATAAGCTTCATCTCCAGTGATGGAGACGGACATTGAAGATTTCATGACTTATTGGTCCTTCCAGATATGTCGTTAAACAGATAGATTTATCATATAGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTNNCCGACATCCCAAATCTGGTAAATCGTGCACTTTCCATGCAGCTGCNTGGTTTAGCTGCGTGCCATTATCAGTATTTGTTTTACTGTTTTTCTCCTATGATTATGATGTTTTCAAGACGTTGGCTTGAGATACTGTTTTTGTGGATGTATCAATATTTTTATGGGTCGTTTTTTGTTGACTACACCCTAACCTCTTGCTGATTGTCATACTATCTTTGGGAACTGGTTTTCCACTATGATTGTATTGATAGTCCAGTTGCGTTGATATAATTCTCTTTTAATTCGCTTTTGTGACAGGAAATGCAACATGTTACCTTTGTGGTGATGGATCTCTTCAAGAACTTCACTGGTTCAAGCAGTCTTATGGGTCTTGGTTCCTTGGGGATTATGTCTGTGAAGGTAATTCTTCGTCTGAGCTTTTTTACTAACCCTTTTAAAAGCTGTTAAGTCTGCATTTGCCCTGGTTTTTCATAATTTTCTTGATGAACCAATCTCTTCAAGGTAATAATTTACAGGAATTAAAACTTTCTTTTTACGAATGGTAAAGTGTTAGAGGGAGTGGCAAACAGGTGAGCTTCCCATTATCTATCTTAGCACGCCCTGAGGTGCCAAAGACAAGTCTAAGCAAATGTGACAAGAGATTCAAGAGAGGTGTAATAAGAAGTTTGCAACTTGGAAAAGACAGTACAGAGTTATCCTTATTAATAGTGTACTTGGCTCTCTTCCAACCTATCTTATGGCCCTCTTTTTTATTATCATTGTAAGGAAGAATCTTGACAAGATCAGAATAAACTTCTAGTGGAATGCTTTAGTGCACCGGGCTTGCCCTTTTACTCTTTCTAGAGAAGCCTATTTTTTATCTTCTACTCTTCAAATCTGTCAATGTTATTAGTCTTGATTTCTACAGTAATTGTTAGTTCTTTCTTGGCAGTTTCTGTGTACTCANNNNNNNNNN
SNP_position 106
allele_1 T
allele_2 C
ASP_primer_S GCGGGCTTAAAAGTCACTCTGATACATTCTCCA
ASP_primer_L GCGGGCAGGGCGGCTTAAAAGTCACTCTGATACATTCTACG
Common_primer TGAAATTTAAGAAACTTTTGAATCGTGTCG
enzyme Stoffel frag.
dye EvaGreen
Line allele-1 allele-2
AE-P03 C C
LS1934 C C
Nakate Shinkuro C C
WCGR112-8 T T
Population Linkage Group Position
LW2010 E_10 56.4
LWA2010 LWA_10 58.969
LWAE2012 E_10 64.607
LWF2_2022 E_10 59.8
DB Program Definition E-Value
EST Name Species Strain