| Crop | eggplant |
|---|---|
| Population | LWF2_2022 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 69.8 |
| Annotation | |
| Source Name | emj01G23 |
| Source Type | genomic |
| Source Sequence | CCATCACACTCGTATCAATATAAGATTTTATTAACTTTTC TCAGACGAGTGCTAAATCAGGTCTGCCCAACCAAGCTTGT CATTGGTATTTTTTAGCACCTTCTCCCTGCTCTCTACCCT ATGCTTCTTCTCTTTGTCCTTGATATATTCTCAATTTGAG ACCTTCACCTTGTAAAGCAACAAGACTAGATGATCACACT TGGTTGATTTAACTGGCCATGAACACCTGTCTAGTCTTGC TCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATA TATATATATATATATCTGTGTGTGTGTGTGTGTGTGTGTG AGAGGTGATCACTTCATTCCATTTCATTCTACACTTAGAA AAATATAAGAGAAAAAGAAGCAAAACTTGGGACAAAACTT CAAGAAGGGTTCAACCAAGGTAAAAGAATTTCGAAAATCA TTTCTAGCCTTTCCAAAAATTATTTGTTTATGCAAACCCC CTTTATTGAGGTCCCTAAATAGCGTAGAAGTGTTGTTGGA GCGATTAGTCCTCTATTTTCTCACTTTTGAAAACCCTAGC CCATTTGTGGAGTTAAAGAGAAAAGGTAAGATTTGATCTT GTTTTATGTGTTGTAAAAGTTGTAAGCATATTGTAGTATG TTAAAATGAAGGAAAATCATGAAATATGGAATGTTGGAAG TGCGTTGTGTATGATGATGTTTGGGGGCTTCTGCTAGCAA GGCCTA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)13(ta)14tc(tg)12 |
|---|---|
| PCR product (bp) | 286 |
| fwd primer | emj01G23/U |
| fwd primer seq. | tttaactggccatgaacacctgtc |
| rev primer | emj01G23/L |
| rev primer seq. | gacctcaataaagggggtttgcat |
| fluor. primer | emj01G23/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-attaactggccatgaacacctgtc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 290 | 290 |
| EPL-1 | 268 | 268 |
| LS1151 (S.linneanum) | 226 | 226 |
| LS1934 | 291 | 291 |
| LS4021 (S. incanum) | 270 | 270 |
| Nakate Shinkuro | 291 | 291 |
| Senryo 2 | 291 | 291 |
| Shironasu | 291 | 291 |
| WCGR112-8 | 293 | 293 |
| White Egg | 293 | 293 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG06 | 72.9 |
| LW2010 | E_09 | 59.4 |
| LWA2010 | LWA_09 | 60.759 |
| LWAE2012 | E_09 | 44.584 |
| LWF2_2022 | E_09 | 69.8 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0111H05_SP6_320204 Chromat_file:SL_EcoRI_111_H05-SP6 SGN_GSS_ID:337030 (vector and quality trimmed) | 5e-16 |
| EST Name | Species | Strain |
|---|
