| Crop | eggplant |
|---|---|
| Population | LWF2_2022 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 60.1 |
| Annotation | |
| Source Name | emd18B04 |
| Source Type | genomic |
| Source Sequence | TGGGGGGGGGGGNNNNNTCATTCATACATACCATATTACT ATACGCTTACCTATTGCCTATGTTATGCATTTGCTTATGG TGCTTATCACTTGTTGCATTGCATCGTACATTCAAACATA CTAACATATACTTTATGCTTATATGATGTCACCATGTAGG AATCGGAGCCCCACTTGACCATTCTCCTCCACGTGGCTAG TACAACTTCTCTCAAGATATTTGGTGAGTCCTTCATTTCG GGGATGATGTTTGTGATCTCATACTATGTTTCAGGACTAT CTTCTTTTAAGTATATATTGCCTATGTGGATGAGTCCGGT AGCATGTCTTAGCCCCCACTAAGTATCTAAGTTTTAGAGG TGTTGTTGTACATGTTTTGTATTATGCTATGAGCTTTGAC TCTCTCTCTCTCTCTCTCTCTTGATTCTTGATGTTTACGA TGTAGAAGTTTTCCCTTAGCCTCATTGTCCCTATGTACTA TCTCTTGTTGTATTTTATTGCTTCTGGAACCAAGGATGTG TAATGATATGTTAAGAGGATTGCTTGGGGTCCCTTCGGAT TTCCCATACTCCGTATCAAGTCTAGGAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)10 |
|---|---|
| PCR product (bp) | 241 |
| fwd primer | emd18B04/U |
| fwd primer seq. | cttcatttcggggatgatgtttgt |
| rev primer | emd18B04/L |
| rev primer seq. | gggacaatgaggctaagggaaaac |
| fluor. primer | emd18B04/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-attcatttcggggatgatgtttgt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 249 | 249 |
| EPL-1 | 249 | 249 |
| LS1151 (S.linneanum) | 245 | 245 |
| LS1934 | 249 | 249 |
| LS4021 (S. incanum) | 235 | 235 |
| Nakate Shinkuro | 249 | 249 |
| Senryo 2 | 249 | 249 |
| Shironasu | 249 | 249 |
| WCGR112-8 | 251 | 251 |
| White Egg | 249 | 249 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG06 | 74.0 |
| LW2010 | E_09 | 57.3 |
| LWA2010 | LWA_09 | 59.158 |
| LWAE2012 | E_09 | 43.926 |
| LWF2_2022 | E_09 | 60.1 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
