| Crop | eggplant |
|---|---|
| Population | LWF2_2022 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 66.1 |
| Annotation | |
| Source Name | emk02E06 |
| Source Type | genomic |
| Source Sequence | ACCTTACCTTGAGTGTAACTACAAAAAAACTAAAAGGTTT GTGAACCGTCTAGTAGTTAAATCAAGTTCCAAAATGGAAA ACCAAGCTTACTTTATGGTGACAAGATTTAATGTTAAAAG TCTGCTACAAGTAGTAGTTCGAATATCGGAAAATCATTCT ATGGATCGGTATTAAGAGTTAAAGAAGAAAGTCTGTAATG GGTAGTTGTAGTGTAATAAGTGATCAGTTCATTACCGGAA AGAGTTGAACTCTTGATGCTTCTAGTGTTGGGTGGATTAT GAGTTGGATACTAATGTCACGATGGCAGATAAATTGACAA AACGAAAATGTTTGGTCAATCGACAAGGTAGAAGGAATGT GATAATTAAGTATGCTAAGGAATTGCAAGGCTGCATATGC ACTAAAGAGCAGTGTAATTAAATTTATTTTCACAGGCTCA CACACACACACACACACATACACCATATATATATAATTGT GGAAAGTTTTTTAGTCGATACGGTTAGGCCAAGGTTTCAG GTAAGGTCCTCCTACCTGTTAAGAAATAATGAAATTTAGA AAATGACATATGAGAGACTAGTCATCATGGTGGAAAGAAA TGGGTGTGTTTACGAAGGAATTTGTACGAAGAACTATCTG TGTAAACTAGTAATTGTGGAGTGCTATCCCATTGAAGGTA ACATAACTAGTATACTATTCTATTCGTTCGACTTTAAAGT TGGTTCAAAGAGTCAAGCTGATGGTGATACTGAATTTAAA TTGTATGTGACTGTCAGATAAAGCTAAGAATTCTATTGGT ATTGAAATATTAACATAATCTAAGGATGCCAGAACCACCT GAATGCTTATGCTACCATTATGGTATAACGATTTTGTCAT TTCAAAAGAAAAAGTCAAATGTCATTTGTTCATAATCTAT TCAGAACTTCATGTAAGATCCTGACTTGAGTGATATCTAC TAGCTGCATATAAGGTGTTTTCTTTATTGCCGGGGTAGTT TGATGGAGGCGTCAAGGTGTGTAAAGCATGGGTGCTTCTG CTAGCAAGGCCTA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)9atacacca(ta)5 |
|---|---|
| PCR product (bp) | 264 |
| fwd primer | emk02E06/U |
| fwd primer seq. | ttgatgcttctagtgttgggtgga |
| rev primer | emk02E06/L |
| rev primer seq. | aaccttggcctaaccgtatcgact |
| fluor. primer | emk02E06/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atgatgcttctagtgttgggtgga |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 265 | 265 |
| EPL-1 | 265 | 265 |
| LS1151 (S.linneanum) | 245 | 245 |
| LS1934 | 254 | 254 |
| LS4021 (S. incanum) | 243 | 243 |
| Nakate Shinkuro | 265 | 265 |
| Senryo 2 | 265 | 265 |
| Shironasu | 274 | 274 |
| WCGR112-8 | 276 | 276 |
| White Egg | 270 | 270 |
| Population | Linkage Group | Position |
|---|---|---|
| LW2010 | E_04 | 45.3 |
| LWA2010 | LWA_04 | 47.425 |
| LWAE2012 | E_04 | 46.601 |
| LWF2_2022 | E_04 | 66.1 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
