| Crop | eggplant |
|---|---|
| Population | LWF2_2022 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 74.7 |
| Annotation | |
| Source Name | emh11N11 |
| Source Type | genomic |
| Source Sequence | ACTCCGCCAAAGTTTCAGTTCTTCGCTTTGGAGCTTCGCT TTTTCTAAGTGAAAAAAAAGTTTCAGCAGAGAGGAGAAGA GAAGAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAAGAGTTCAATCAAATGAAGTCAAATCCTCT CAATCAAATAAAGTCCAAATGGAGTTTCTTCAGACTCTTA GGAAGAGGGAGGAAAGGTTAGGTCTTAAGTTTCGTATGTG AGAAATGGATTGGATTTATGTTAATTTTGTTTATTATTTA GGATGGGTCGGGTTTGGGTTGGGTTGGGTTGGGATTGGGT GAAACAAGAAACAAGTTAAATGGAGGTTATTTGGGGCTTT CCGTCCAAATAGGGGCATAGATGGTGAGATTTGTAATGCC GGGGGTATAAATAAATTCATTTTAACGGCGAAGATATAGT CAAACAATACTCAGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)3gagaagagaagagggg(ag)20 |
|---|---|
| PCR product (bp) | 285 |
| fwd primer | emh11N11/U |
| fwd primer seq. | tttcagttcttcgctttggagctt |
| rev primer | emh11N11/L |
| rev primer seq. | ccaaacccgacccatcctaaataa |
| fluor. primer | emh11N11/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-attcagttcttcgctttggagctt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 287 | 287 |
| EPL-1 | 287 | 287 |
| LS1151 (S.linneanum) | 272 | 272 |
| LS1934 | 287 | 287 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 287 | 287 |
| Senryo 2 | 287 | 287 |
| Shironasu | 287 | 287 |
| WCGR112-8 | 291 | 291 |
| White Egg | 289 | 289 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG05 | 54.6 |
| LW2010 | E_04 | 52.7 |
| LWA2010 | LWA_04 | 55.075 |
| LWAE2012 | E_04 | 53.659 |
| LWF2_2022 | E_04 | 74.7 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0074N17_T7_344325 Chromat_file:SL_EcoRI_074_N17-T7 SGN_GSS_ID:361151 (vector and quality trimmed) | 3e-07 |
| EST Name | Species | Strain |
|---|
