| Crop | eggplant |
|---|---|
| Population | LWF2_2022 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 65.5 |
| Annotation | |
| Source Name | emd01C04 |
| Source Type | genomic |
| Source Sequence | TTGTGATGCTTTGAGGAGCAATTCAAGTGAGTTATTTATA GAAGTTTATGCTTTGTTTATGGTATTCTTCTGAATGTTTT CATGTAACTTGTCATTCAATTTCTAAGTTAGCTCATGTAA GATTTTGGGAACATTGTTGCTTATTTCCTGCATGAAATGT GTTTGAGTGTGTGTGCTTTTGAGTGTAATTCGTATTAATT ATTTATATCTTAAGTCTTGTGTCATAACTAATAGTTCCAT AAAACAAATTGAGAAAATTATATTTTTGCATGTGTGTATT CGTGTGTGTGTGTGTGTGTGTGTGGAATTCAATATATAAT TTGTGGATTATTTGTGTTTCTTAGAAGCATATATCCGTTA TATTGTTATTACAGAAGGGGATTAAATGTAACAACCCATT TTGAGATGAAAAGACCCACATTAGCAAAGCACAAAAGAGA TGATAGGTATATAAGTAAAGTTCTAGTCTATATATTGTTA GGAGCCTTTGGGGGTGAGCCCAAAGGGACAAATCCGTGAT AGGCTAGTATCAAGAGCGATAATACTTCATAGTGTTGGGC TAGGTCCTAACAGGTGTTATCCAAGTCACTCTTGTGTCAG CCTTATCGATGTAGGTTATAGTTCAATTGAGTTTAAGCAA ATCCCGGTGAGGCGGGGCAAGCCTCAGTTCTGAGCCTAGG CAAATCCCATGCGATGGGAAAAACCTCAATGAGGACGCTG AGTCTATAGAGGGGGTATATATAACAACCCATCTTGAGAT GATGTCACGACCCAACCTA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)3tattcg(tg)11gaattcaa(ta)3 |
|---|---|
| PCR product (bp) | 273 |
| fwd primer | emd01C04/U |
| fwd primer seq. | tcctgcatgaaatgtgtttgagtg |
| rev primer | emd01C04/L |
| rev primer seq. | tgggtcttttcatctcaaaatggg |
| fluor. primer | emd01C04/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-acctgcatgaaatgtgtttgagtg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 278 | 278 |
| EPL-1 | 278 | 278 |
| LS1151 (S.linneanum) | 278 | 278 |
| LS1934 | 278 | 278 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 278 | 278 |
| Senryo 2 | 278 | 278 |
| Shironasu | 278 | 278 |
| WCGR112-8 | 282 | 282 |
| White Egg | 278 | 278 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG09 | 40.8 |
| LW2010 | E_04 | 44.8 |
| LWA2010 | LWA_04 | 46.954 |
| LWAE2012 | E_04 | 46.21 |
| LWF2_2022 | E_04 | 65.5 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0058L22_SP6_257203 Chromat_file:SL_EcoRI_058_L22-SP6 SGN_GSS_ID:274029 (vector and quality trimmed) | 5e-13 |
| EST Name | Species | Strain |
|---|
