| Crop | eggplant |
|---|---|
| Population | LWF2_2022 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 33.4 |
| Annotation | |
| Source Name | emg01J09 |
| Source Type | genomic |
| Source Sequence | TCCCATAAAATTCATTAAGTGTTGATTCGGGTCCTCCCCT ATTGTTTAGCTAAAAAAACTCATTCAAGTTTAGCATCTGA AGCATGGTATTTATTATAGTTAATTTGATGCCCGAGGGTG GTAGCGGAAGAACTATGGCTCCAGTTCCACATGCACCATC AGTATCTATATCATCTTGTCTAGTGCAATTATTAGACTTG GACCTCTGCCTCTAGGTAGTTGTTGCTGCTGAAGGGGTAG AGGAGGAGGCAAGTGCAAATCATCATTCAAATCAAGTAGA CCCAGGCTATCATTACCCCAGTTATCAGTATTAGCAGGCA ACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTTTCTTCATGCTCTTATGCATTCATCTTTCATATAG ATCTTTGGAGCTCTGGATAGTACGGAAGAAGC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)21 |
|---|---|
| PCR product (bp) | 192 |
| fwd primer | emg01J09/U |
| fwd primer seq. | tagaggaggaggcaagtgcaaatc |
| rev primer | emg01J09/L |
| rev primer seq. | tcttccgtactatccagagctcca |
| fluor. primer | emg01J09/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atgaggaggaggcaagtgcaaatc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 197 | 197 |
| EPL-1 | 195 | 195 |
| LS1151 (S.linneanum) | 202 | 202 |
| LS1934 | 178 | 178 |
| LS4021 (S. incanum) | 202 | 202 |
| Nakate Shinkuro | 196 | 196 |
| Senryo 2 | 196 | 199 |
| Shironasu | 197 | 197 |
| WCGR112-8 | 195 | 195 |
| White Egg | 176 | 176 |
| PI 286106 | 196 | 196 |
| Population | Linkage Group | Position |
|---|---|---|
| LW2010 | E_03 | 35.0 |
| LWA2010 | LWA_03 | 35.098 |
| LWAE2012 | E_03 | 44.645 |
| LWF2_2022 | E_03 | 33.4 |
| N28F2 | E_03 | 8.2 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
