| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 40.355 |
| Annotation | |
| Source Name | emk04H07 |
| Source Type | genomic |
| Source Sequence | ACGAGTTTGTTAGGAGGAGAACGTTGGATTTTGGCTGGGT TGTTGGTCTAGTTCTTCGTCGATGAAGATGGGGTATAACA CGTATAAGGGAGAAGGAAAGAGGAGATAGAAAAAGAATTG GGGGCGCGCACACACACACACACACACACATACACACATG CGCACACACACACACACACATATATATATATATATATATA TTGGTGTGTTTATGCTGAAAAATAATGAGATTGAGCAGGG TATTTGAGTAATTGGGCCAATTTTTAGTCCAAAAAGTGAA CTAAATTGGTCTGGAAATGAATTAAATGGGTTGTGGAATT GATTTTAAAATTTGACCAATTTGATTGCAAGCTTGGCCAA TTAAATATAATCAAATCAAATTTGATTGACTAATTTGACT ACACGACGAATTAATACAAATTAATTGAAGAGCTTTTAAT ATTATCAAACTGAAATAATTAAATTAATTACAGAATAATA ACTCCTAAAAATAAAATGAAATTTATTTGAGAAAATATTT TTTTTGTATTTAAAAAACCTAATTATTTCAAATTGTCAAA ATTAAAAACTCAATAATTAATTCATATTGTGGAGGCTCAA AATTGGGTATCAACAGCCGCTCCTTTCTTTGGATATGATC GATGAAAGAGATCGTAGACAAAGAAACTTGACAAATCCAT TTTTAGCCGACCACATCTTCATCTTTTGAAAGGCTCTTGG TATGGACTTCGGGAAATTATGGTCGGATCCTAGTTTTGGG TTTCCTACATATCTCAGGTTACATGAGAATTCAGGGCACT TGTAGTTCAAAGCACTTAATTTTACGCACGATTTTGAAAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (gc)3(ac)10at(ac)3atgcgc(ac)8a(ta)10ttg(gt)3 |
|---|---|
| PCR product (bp) | 231 |
| fwd primer | emk04H07/U |
| fwd primer seq. | ttttggctgggttgttggtctagt |
| rev primer | emk04H07/L |
| rev primer seq. | tggcccaattactcaaataccctg |
| fluor. primer | emk04H07/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atttggctgggttgttggtctagt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 231 | 231 |
| EPL-1 | 235 | 235 |
| LS1151 (S.linneanum) | 249 | 249 |
| LS1934 | 231 | 231 |
| LS4021 (S. incanum) | 235 | 235 |
| Nakate Shinkuro | 231 | 231 |
| Senryo 2 | 231 | 231 |
| Shironasu | 240 | 240 |
| WCGR112-8 | 233 | 233 |
| White Egg | 236 | 236 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG04 | 76.1 |
| LW2010 | E_06 | 32.7 |
| LWA2010 | LWA_06 | 33.884 |
| LWAE2012 | E_06 | 40.355 |
| LWF2_2022 | E_06 | 34.6 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0243E19_T7_378073 Chromat_file:LE_HBa_243_E19-T7 SGN_GSS_ID:395284 (vector and quality trimmed) | 4e-20 |
| TomatoBAC_end | BLASTN | LE_HBa0057M05_T7_45513 Chromat_file:LE_HBa_057_M05-T7 SGN_GSS_ID:45513 (vector and quality trimmed) | 4e-20 |
| TomatoBAC_end | BLASTN | LE_HBa0011O24_SP6_121310 Chromat_file:LE_HBa_011_O24-SP6 SGN_GSS_ID:138863 (vector and quality trimmed) | 9e-15 |
| TomatoBAC_end | BLASTN | SL_EcoRI0127B02_SP6_332198 Chromat_file:SL_EcoRI_127_B02-SP6 SGN_GSS_ID:349024 (vector and quality trimmed) | 1e-13 |
| TomatoBAC_end | BLASTN | SL_EcoRI0035G15_SP6_238597 Chromat_file:SL_EcoRI_035_G15-SP6 SGN_GSS_ID:255423 (vector and quality trimmed) | 1e-13 |
| EST Name | Species | Strain |
|---|
