| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 43.406 |
| Annotation | |
| Source Name | eme02B08 |
| Source Type | genomic |
| Source Sequence | AACCTGATAGTCACATTGTTCTGGACTCTCACATTTGTAA TCAGCATGGTGCAAGGAGGCACATAGAGGGTCCTTGCATG GCACAAGGTCATTGTTTGGTTTGTAGAATGGATGAGGCGC CTACAAGTACAGAAGAAGTAGGATGAGAAAGTCTTCCATA AATATGAAATTTGTTCAAAGTTAATTATCAAAAGCAACAA GTTTCAAAATGATCCCATCAACAACTGATTAAACCAGGGG CATTACTTGGGAAAAGCAAAAGTCAGGAGAATTATCTCTC AATTATCAAATAATATCTTAAACATGATAGTTCTCTGGAA ATATGGAGAGTGAATTTTGATAGAGCCAACTCTTCTCTCT CTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCCCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGAGCACTT GATATATAGAGGTTGAATCCAATGATAGAACACTACTCCA TGAGATTGCAATGATCATTTAATTTGAGATAGTAATAAGC CATTACAATTATGAGGAACCCAAACTACATAAAAACTAAT TTGAGTGCTCTTGTATTGAACTAGCATAAAAATGAGTTGT AAAAACAGTAAGAAAGATTGTTAAGACTTTACTCTTGTGC AGCGAACACAGGGAGCATCACATTGCAGCCACGTGAGGTC GCTGCCAGTGTCAGGATCAAGAAAAAAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)12c(ct)7cc(ct)18ttgagcacttg(at)3 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme02B08/U |
| fwd primer seq. | ttgggaaaagcaaaagtcaggaga |
| rev primer | eme02B08/L |
| rev primer seq. | tgggttcctcataattgtaatggc |
| fluor. primer | eme02B08/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-ATTGGGAAAAGCAAAAGTCAGGAGA |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 301 | 301 |
| EPL-1 | 302 | 302 |
| LS1151 (S.linneanum) | 297 | 297 |
| LS1934 | 302 | 302 |
| LS4021 (S. incanum) | 291 | 291 |
| Nakate Shinkuro | 306 | 306 |
| Senryo 2 | 301 | 301 |
| Shironasu | 304 | 304 |
| WCGR112-8 | 304 | 304 |
| White Egg | 304 | 304 |
| PI 286106 | 302 | 302 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG04 | 71.2 |
| LW2010 | E_06 | 35.6 |
| LWA2010 | LWA_06 | 36.768 |
| LWAE2012 | E_06 | 43.406 |
| LWF2_2022 | E_06 | 41.9 |
| N28F2 | E_06 | 49.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0105D24_SP6_271291 Chromat_file:SL_MboI_105_D24-SP6 SGN_GSS_ID:288117 (vector and quality trimmed) | 2e-58 |
| TomatoBAC_end | BLASTN | SL_MboI0134M23_SP6_381536 Chromat_file:SL_MboI_134_M23-SP6 SGN_GSS_ID:398730 (vector and quality trimmed) | 1e-22 |
| EST Name | Species | Strain |
|---|
