| Crop | eggplant |
|---|---|
| Population | EW2009 |
| Linkage Group | LG05 |
| Marker Type | SSR |
| Map Position | 22.8 |
| Annotation | |
| Source Name | emf01L14 |
| Source Type | genomic |
| Source Sequence | CTTTTGCTCTAGTAGGTCCGTAAAGTTCACTAGAATAAGC AATATTATTGAACCAAACAAAACAAGCAGCAATGAAACCA AACACAACTAAAAAGGAGAGAGAGAAAGAAACAAGCAACA CAAGTGGAGTGGGATGACAAAAGTGGTACTTCAATTGAAA AAACAGTTAAACAAACACAACTTACAAAAAAATCCTATGG CACAGATGATAAGATGAACACAGGTTAACAACAACAACTA CTACACCACAATCTCAAACTAGTATAGGTGAATTCTCCAT ATTAATTCCTAAAATACCATTAAAAAAGGAAAAGAGAGAG AGAGAGAGAGAGAGAGAGAGAATACAAATGGAGCTACGCA GTTTCTGCTGCAATTCAGCAGACAGAGAGGCGCTTCGGTC AATGTGATCACGAAGCATGGCTGAACTCAACATCTCATCA CACAAGAATTTAAGAAGGAAAATTCTCTGCACCATCGAGA AGAAATTGTAAATGTCAAATTAGGGTTAGGTAAAGCTCTT CTTGAAAAGTATAAAGTGAAACATCGAGTGGTGACACCTT ATCATCCTCAGACAAGCAGGTAGGTGGATGTATGTACTAG GAAAATCAAACAGATCCTATCTATGACTGTGAATGTAAAC CGAACAGATTGGTAACGGAAGCCGAATAACGCATTATAGG CATACCAGACAACATTCAAGACCCCCATAGGAATGTCTCC CGACAAACTTGTCTTTGGGAAAGCATGTCACTTGCCAATG GAACTTGAGCATAAAGTGATGTGGACATTGAAGAAATTGA ATCTTGATTGAACTGATGTAGCAAAATCTAGACTGAGTCA ACTTAATGAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)14 |
|---|---|
| PCR product (bp) | 253 |
| fwd primer | emf01L14/U |
| fwd primer seq. | acacaagtggagtgggatgacaaa |
| rev primer | emf01L14/L |
| rev primer seq. | cagcagaaactgcgtagctccatt |
| fluor. primer | emf01L14/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-acacaagtggagtgggatgacaaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 267 | 267 |
| EPL-1 | 253 | 253 |
| LS1151 (S.linneanum) | ||
| LS1934 | 253 | 253 |
| LS4021 (S. incanum) | 296 | 296 |
| Nakate Shinkuro | 253 | 253 |
| Senryo 2 | 253 | 253 |
| Shironasu | 245 | 245 |
| WCGR112-8 | 245 | 245 |
| White Egg | 245 | 245 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG05 | 22.8 |
| LW2010 | E_04 | 13.2 |
| LWA2010 | LWA_04 | 25.708 |
| LWAE2012 | E_04 | 24.94 |
| LWF2_2022 | E_04 | 30.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0076H01_SP6_17616 Chromat_file:LE_HBa_076_H01-SP6 SGN_GSS_ID:17616 (vector and quality trimmed) | 3e-11 |
| TomatoBAC_end | BLASTN | SL_MboI0039D13_SP6_282321 Chromat_file:SL_MboI_39_D13-SP6 SGN_GSS_ID:299147 (vector and quality trimmed) | 1e-10 |
| EST Name | Species | Strain |
|---|
