| Crop | eggplant |
|---|---|
| Population | EW2009 |
| Linkage Group | LG05 |
| Marker Type | SSR |
| Map Position | 43.9 |
| Annotation | |
| Source Name | eme25C09 |
| Source Type | genomic |
| Source Sequence | ATCTAGCATAGACCATTTTGGTCTTTGCCTTAGCAGCCAA CGCTGATCTATCTAGCTTGAAGTAGTCTACATCAAAGACG AGGGTGATCATTTGATGTTTGCGGATCATTCTATATCCTT CAGCATGAATGACCCATCTTTTGCATTTTGGGACTAGCCG GTTATTATATTTATATATGCTCCACTTTAGGAGCTTGTAC TTTTCTTTATTTTGTAGTAGCTTTGTATTTTTTTTAAAAG AGAAAACTTGGGGGTAGGGGAAGGAGAAAAGAGGGGAGAT TACAATGTGGGGAATTGAACCCTTACCAACAAGGTGGGAG TTCAGGTAGCCAATCAACTAAACTACTAAGATTCCCTGTA GCATTGTACTTGTGACTTTCAAGTTTTGGAGGGATACACA CACACACATATATATATATATACACACACACACACGCACA CTCTTTTTTCCATATATTTTAGTTCTTTTTATTGTTATTA GCTTGTTTCTCTTAGTTCCTTTTTAGTTCTTCCCCCTCAT ACCCATTCCTAGAAGTTTCAGATTACGAGTTAGCTTACCT ACTGGTGGGTTATGATAGGTGCATTCATGACTTAAGGAAT TGGGGTACGA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)6a(ta)6t(ac)7gcacactcttttttcc(at)3 |
|---|---|
| PCR product (bp) | 234 |
| fwd primer | eme25C09/U |
| fwd primer seq. | acccttaccaacaaggtgggagtt |
| rev primer | eme25C09/L |
| rev primer seq. | ctaggaatgggtatgagggggaag |
| fluor. primer | eme25C09/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-acccttaccaacaaggtgggagtt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 234 | 234 |
| EPL-1 | 234 | 234 |
| LS1151 (S.linneanum) | 237 | 237 |
| LS1934 | 234 | 234 |
| LS4021 (S. incanum) | 231 | 231 |
| Nakate Shinkuro | 234 | 234 |
| Senryo 2 | 234 | 234 |
| Shironasu | 234 | 234 |
| WCGR112-8 | 230 | 230 |
| White Egg | 234 | 234 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG05 | 43.9 |
| LW2010 | E_04 | 44.8 |
| LWA2010 | LWA_04 | 46.951 |
| LWAE2012 | E_04 | 46.212 |
| LWF2_2022 | E_04 | 65.5 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0127P06_T7_60251 Chromat_file:LE_HBa_127_P06-T7 SGN_GSS_ID:60251 (vector and quality trimmed) | 1e-06 |
| EST Name | Species | Strain |
|---|
