| Crop | eggplant |
|---|---|
| Population | EW2009 |
| Linkage Group | LG05 |
| Marker Type | SSR |
| Map Position | 43.9 |
| Annotation | |
| Source Name | eme11G05 |
| Source Type | genomic |
| Source Sequence | CCGCTTGGCTATCGGCGTGAACAGGAACTAGTAACATTGG TGAAACAGAGAGATCCATAAGGAGATGAATCATCCAGGTT ATTTCAGCAGTGACTCGTCTCATGGAGCGATATTGTGCCT CAGCAAAAGAGAGAGAGAGAGAGAGAGTTATTTCTTGGAC TTCCAAGAGATGGGAGAGCCACGTAAACTGATGAAAAACA TGCTTACTGAGTGACGGGAGTCAGGGCAAGATGCTCAATC TGCATCACAAAAAGCAAGGAGAGACATTGAGGGATTGGAG TTCAAGAGAAGACCCTGACCAAGAGAATCTTGGAGATATT GAAGAACTCGATAAGCTGCTACAAGCTGATCAAGACAAGG ACTTTGCATAAATTGACTGAGAATCAAGATTGCAAAGGAG AGATCCGGGCGAGTATGAGTCAAATAATTGAGTTTTCCTA TGAGTCACCGATAAACTGTGGGATCAGTGAGCAAAGAACC AGAGGCAACAAATAATTTGACAGAAGGATCCAGAGGAGAG GAGACCTTTCCAATGTGTGAGCAATCATATTCAGAAAGCA AATCAAGGGTAAACTTCGGTTGAT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)10 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme11G05/U |
| fwd primer seq. | ctcgtctcatggagcgatattgtg |
| rev primer | eme11G05/L |
| rev primer seq. | ccttgctttttgtgatgcagattg |
| fluor. primer | eme11G05/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-ACTCGTCTCATGGAGCGATATTGTG |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 171 | 171 |
| EPL-1 | 171 | 171 |
| LS1151 (S.linneanum) | 171 | 171 |
| LS1934 | 171 | 171 |
| LS4021 (S. incanum) | 170 | 170 |
| Nakate Shinkuro | 171 | 171 |
| Senryo 2 | 171 | 171 |
| Shironasu | 171 | 171 |
| WCGR112-8 | 169 | 169 |
| White Egg | 171 | 171 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG05 | 43.9 |
| LW2010 | E_04 | 44.8 |
| LWA2010 | LWA_04 | 46.954 |
| LWAE2012 | E_04 | 45.857 |
| LWF2_2022 | E_04 | 65.5 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
