| Crop | eggplant |
|---|---|
| Population | LW2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 87.5 |
| Annotation | |
| Source Name | emi04O04 |
| Source Type | genomic |
| Source Sequence | CTAATATATACTTTTTTTTTTGTATACATAAGTGTGTATA TATTTTATATATTTATCAAGTGAATACTATTAAAGTGGTT AGGATATCATCTTTTCATGCCGAATACACGGGTTTGATTC CCGTAAGGGATAGGTACTTATTTTCGGTCGTTTTCAGTTA GTGTTCATTGCTGTCTGACAGAAAAAGATGGTCCGAAAGC TTCCTCTCTCCTAGCAGACAAGACGTTTGTTGACCAGCCA AATATATAACTTGTCCTAAGATTAAAGGGAAAATCACAAG TATTAAGACCTAATTAGGTTAAACTACTTTGGTCTGAATG GTCTAATAAACTTTGGGCTCTAAAAACAGACTTTAAGGGC TTCCATCACTTTGGATTGGGCCACTATAAGTTGGGCCTAA AAGTGGGCTTTGGTAGAACCTAACTTTTACCGTGGTTTGT TTGGACAAATATAAATTTATCAGATTTCCAAATAAATATC GAATTTAACCCTACTAGATCAATAGTAAGAAACTTGAAAT TAAATATATATATATATATTAAAAGAAAAACAGTAGTACG ATGAAACTATCGTGGATTGATAGATGGTGCATTATATTGC CTCCATATTTTATGCATATATCCTGACAACATCATTTCCT CTTAGACTTTATTGATTTAATTTGTCATCAATTTGAAACA TTTGACATTTTTGAAAATCCAACCACCTATGTTTTGGACT TGTCATTTGGTAGTTGGTACAATAGTTTTGCATGTGCTTT GTCTTTTTTTTTTTTATAACTATCGTTCGACATTCAGTTG TGTTGAGAATCTTTCAAAAATAGTTTTTCTATCTCTATGA GGTAGTGGTAAGGTCTGCATACATTTTATTATCCCTAAAC TCCACTTGTGGGATTTCATTAGGTAAGTTGTTGTTGTTGT TCATCCGATGTCCAGTATTCATATTGAGATTCGATTAAAT TTGAATA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)7 |
|---|---|
| PCR product (bp) | 242 |
| fwd primer | emi04O04/U |
| fwd primer seq. | tttaagggcttccatcactttgga |
| rev primer | emi04O04/L |
| rev primer seq. | aatgcaccatctatcaatccacga |
| fluor. primer | emi04O04/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-attaagggcttccatcactttgga |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 242 | 242 |
| EPL-1 | 242 | 242 |
| LS1151 (S.linneanum) | 247 | 247 |
| LS1934 | 242 | 242 |
| LS4021 (S. incanum) | 239 | 239 |
| Nakate Shinkuro | 242 | 242 |
| Senryo 2 | 242 | 242 |
| Shironasu | 242 | 242 |
| WCGR112-8 | 241 | 241 |
| White Egg | 242 | 242 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG01 | 9.4 |
| LW2010 | E_11 | 87.5 |
| LWA2010 | LWA_11 | 88.36 |
| LWAE2012 | E_11 | 84.187 |
| LWF2_2022 | E_11 | 118.8 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0233J08_SP6_390910 Chromat_file:LE_HBa_233_J08-SP6 SGN_GSS_ID:408104 (vector and quality trimmed) | 2e-25 |
| TomatoBAC_end | BLASTN | SL_EcoRI0025K05_T7_235762 Chromat_file:SL_EcoRI_025_K05-T7 SGN_GSS_ID:252588 (vector and quality trimmed) | 2e-10 |
| TomatoBAC_end | BLASTN | LE_HBa0015I22_SP6_129823 Chromat_file:LE_HBa_015_I22-SP6 SGN_GSS_ID:146654 (vector and quality trimmed) | 9e-09 |
| TomatoBAC_end | BLASTN | SL_EcoRI0018E20_T7_306153 Chromat_file:SL_EcoRI_018_E20-T7 SGN_GSS_ID:322979 (vector and quality trimmed) | 9e-06 |
| TomatoBAC_end | BLASTN | SL_EcoRI0033E22_T7_279337 Chromat_file:SL_EcoRI_033_E22-T7 SGN_GSS_ID:296163 (vector and quality trimmed) | 9e-06 |
| EST Name | Species | Strain |
|---|
