| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 43.5 |
| Annotation | |
| Source Name | emk04N01 |
| Source Type | genomic |
| Source Sequence | ACAACAGCTATCCAGTAAAGTAGGTATTAATAAGTCGGGA CAAGAGTGTTTAAATGTATAACAGGAAATATAACTATTCA TGACATATATACATATCTTACTCAGGACTCCCAACCACAA ACTAGCTTCCAATATACATGTATTGCAACTCAGTCTAGTG TTAAGAAAAGTCTAGTCTACCTAAAAGTTGAAACCACGTG CTCCAGATTAGTCCATGAAAGTTTTTCCTCCCTAACAACC TCCAAATATCGCTTAGCTATCAATATAAGTCATAATATCA GTGCGGCTATTTTGCCTATAATATCTCAAGAAACAGCGAA GATACGTTAACTATTACTAAAACCTGGAAAAATGGGGTCC ACGCCCAAAATGACAAACCAACCCCTATAAAATGATCTCT ACGTCACCTCGAGCCTATATATAAAAATTGAGCTCAAAAC CAAGCTCAGAACAATCAGAAATAATCCAAACAAAATGATA CAAATACACACACACACATGTGTGTATATATACATACACA CACACACACACACACACACACATATATATATATATATATA TATATATATAACTAGAATGGCAATCTACACATATAAATCT AAACTACATATACAAGGCCAGTATCTGAATACAAAAGACG ACCATCAAAATAGAAGGAGACTGCAGAATGTCCAAAGCTG TTGATGCTCACCAGTGCCTACTGAATCACTTATGAACCCC TAACTCAGCGACTTCAGCTAGAACTTGGACTTGCACTATG AAAAGATGTAGAAAAATAGGGGCGAGTACATGTTATTTCA ATTCAGAGGTGAAATTATTATACCTGGTTTCGAAAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)6a(tg)3(ta)4cat(ac)13a(ta)14 |
|---|---|
| PCR product (bp) | 296 |
| fwd primer | emk04N01/U |
| fwd primer seq. | atgatctctacgtcacctcgagcc |
| rev primer | emk04N01/L |
| rev primer seq. | gcatcaacagctttggacattctg |
| fluor. primer | emk04N01/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atgatctctacgtcacctcgagcc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 293 | 293 |
| EPL-1 | 295 | 295 |
| LS1151 (S.linneanum) | 299 | 299 |
| LS1934 | 291 | 291 |
| LS4021 (S. incanum) | 325 | 325 |
| Nakate Shinkuro | 295 | 295 |
| Senryo 2 | 293 | 293 |
| Shironasu | 293 | 293 |
| WCGR112-8 | 295 | 295 |
| White Egg | 293 | 293 |
| PI 286106 | 295 | 295 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 43.5 |
| ALF2 | AL12 | 51.1 |
| LW2010 | E_12 | 49.0 |
| LWA2010 | LWA_12 | 45.404 |
| LWAE2012 | E_12 | 46.459 |
| LWF2_2022 | E_12 | 53.7 |
| N28F2 | E_12 | 41.7 |
| NAF2 | NA12 | 39.5 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
