| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 43.8 |
| Annotation | |
| Source Name | emj02M05 |
| Source Type | genomic |
| Source Sequence | CCCTAGGGGCTTTCCACTAAATGTTGCAAATAAAGAAATG GGAGTGTTAATATGTTGTAGAAAGCTCCATTAGAAACTTT GACTGCACTATTGGATCCAAAACATCAAAACATTGTTCGG TTATGAAAATCAGAGTACAGATGAGCCTGAAATGACGAAA AAGAGGTAGAAGGAAGTACGGAAAGAAAGAGGGACAAGTG GCACTTTTGGGCGGGACTACCACATGGCACAATATGATGT TAGCATATGGTAGTGTGCTGTCAGCTGTGCACGATACATA TATATATACTCCTTTCATAAGAAATTAGTAATATATATGT ATATATATATGTGTGTGTGTGTGTGTGTGTATGTATGTAT GTATTTTCCTTTACAACTTTGCACTGTAATTCCGAGCTCA TTTTTCATCTGATTTGAATGATTCAAAATGCTATATGACT CGGGCTTTCGCAAGAAATGTCATGGTAAAGTTGGATTCAG GATTTGACATGTATTTCGAGGTAAACCTCTACTTTTTCTT CATTGATATATCGGGAATAAGTAAAAACTTTACAATGATT GCATTGTAAAGTTTATGTCTAAATTGTTCTACATTATGAG AGGGACTCTGTGGTGTACTGGGAGTTCGTTGATTTTGTTC ATTTTTGAGAATTTTGACTGAGAAACTTTTGAAATGAATA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)5ctcctttcataagaaattagtaa(ta)3tg(ta)5(tg)10 |
|---|---|
| PCR product (bp) | 263 |
| fwd primer | emj02M05/U |
| fwd primer seq. | cagatgagcctgaaatgacgaaaa |
| rev primer | emj02M05/L |
| rev primer seq. | tgagctcggaattacagtgcaaag |
| fluor. primer | emj02M05/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atgatgagcctgaaatgacgaaaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 231 | 231 |
| EPL-1 | 266 | 266 |
| LS1151 (S.linneanum) | 282 | 282 |
| LS1934 | 268 | 268 |
| LS4021 (S. incanum) | 212 | 212 |
| Nakate Shinkuro | 266 | 266 |
| Senryo 2 | 266 | 266 |
| Shironasu | 268 | 268 |
| WCGR112-8 | 266 | 266 |
| White Egg | 230 | 230 |
| PI 286106 | 268 | 268 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 43.8 |
| LW2010 | E_12 | 50.3 |
| LWA2010 | LWA_12 | 46.435 |
| LWAE2012 | E_12 | 47.007 |
| LWF2_2022 | E_12 | 55.4 |
| N28F2 | E_12 | 43.8 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
