| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 38.9 |
| Annotation | |
| Source Name | emi06F08 |
| Source Type | genomic |
| Source Sequence | TTTGTAAGTTTGTAAATATAGTCTTTGTACTCTATCTGCT TTTTTATTAATGTGAATTCTGATTATTATTCTTATCGGGT AAATCGAAAATCGAACCGTTAAGATATAAAATAGATAAAT CAAAAAAACCGATAAAAATTATTTTATTGATTTCTTATTG GAATAACATATTTAAAACCGAAAACCGATCCGATAATATA TAAAAATGAACCAAAGCGAGAGCAACTTAATTCCTTACCA ACTAAACTATAGAACCACTTGTTCATTGGGTACCATGTTA TATATTTATACAAATTATATATATTTATACACACACACAC ACACACACACACATATATATATATATATATATATATATAT ATATAGAGAGAGAGAGAGAGAGAGAGAGAGTTGCAACCCG AGATCACCGGGTGCTGTGGCACCCTCAAACTTAAGCATAG ATCCACCCCTATGGACCTGGTGTCACCATATCAGGAGCTC CAAACTTCCATCATCACCATCTCAGAAACAACCAAAGAAA TGATCTTTTCTTGATTTCTTTCTTAAATTCAAACCTTAAT CACTCCAAAAAGGAAAAGAAAACACCCCAAATGGCTTCAA TCAAGCCATCTTATCGCTACGCCAACGCCGCCACTTCTTC CATAGATTCACTCCAATCTTCCCCCAAATCCAACCCCTCA TCCTCCACTGACCTAACCCCTTACCCCCACACCCTCCATT CCTCATCACGCGCTCTGACGCGCCATCACGCGCCGCCCAC CACACGCCACAACTTGGGGTCCCTGGTCCAAAAACTGGTG GAGCACAAATCTGGGCCATCGAATAAATCGAAGCCTAAGG GTGAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3tttatacaaat(ta)4tttat(ac)12a(ta)15t(ag)13 |
|---|---|
| PCR product (bp) | 257 |
| fwd primer | emi06F08/U |
| fwd primer seq. | aaaatgaaccaaagcgagagcaac |
| rev primer | emi06F08/L |
| rev primer seq. | caggtccataggggtggatctatg |
| fluor. primer | emi06F08/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-ataatgaaccaaagcgagagcaac |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 262 | 262 |
| EPL-1 | 261 | 261 |
| LS1151 (S.linneanum) | 289 | 289 |
| LS1934 | 261 | 261 |
| LS4021 (S. incanum) | 271 | 271 |
| Nakate Shinkuro | 259 | 259 |
| Senryo 2 | 259 | 259 |
| Shironasu | 256 | 256 |
| WCGR112-8 | 257 | 257 |
| White Egg | 259 | 259 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 38.9 |
| ALF2 | AL12 | 44.7 |
| EW2009 | LG11 | 28.8 |
| LW2010 | E_12 | 43.8 |
| LWA2010 | LWA_12 | 40.597 |
| LWAE2012 | E_12 | 41.343 |
| LWF2_2022 | E_12 | 48.1 |
| NAF2 | NA12 | 32.7 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
