| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 45.8 |
| Annotation | |
| Source Name | emh04E02 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNCTAATCGACAAACTATTTGAGTATG AAATGTGATGTGATACTCATAGAAATGTTGTAACAAATCA AGTCTTATGTATATTAATGTTTCATCATCAAACCTTGAAT ATATAGTCTCGTTTAATGGCAGAGACAATAGAATACCTAT AATTAATTGATTTTAGGAGGTAATACTTATATACTCATGA AATATTGTACAAAATAAATTTATCAATATTTGTACGCCCC ACTTAAATGAATATCTTATGTAGTGATCACTTGTAGGTAA AGATAAACAATAATTCATTAGATATATATATATATATGTG TGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTA ACAAGGTTGTATCAAGATTTGTACGTTTAGAATATCTTGT GCAGTGATGTTGCAGACAAAAGATAAACGAAGATGTATAA AGTACGTTGATTCTAGGAGATTATATATACTCGTCGAATG GCATAATAAACCAAGTTCAAACTAAGTNNNNNAATTTTTT ACAAAATCGATCATTTGAGGTATCATTTTAATTTTTTAAA TATGCTTTTAATTAGTTAAGCTCATTTTGGGGCTTATTGT TAATATGAAACAGTGTTGTTTCGCGACTAATGGATCTCTT ATTGACAGATTGGAGAAATAAGCTAGTTCACTTGCCTTAG GTGTTAGAAATCATGAATAGGCCTTATAAATATTTTCGAG TAGCCATGAGCATGTCTTCTATCTTGCTAGCTTAGTATAT GGGATCCCCCAAGAGTCGTAGAAGGTTTGGTTGCTCAAGA AAACCCGTAGAAATTCGTGTGTGAAGTTTTGAAGTGTTGA GAAGGGTTTTGAGGTAAGTTAAAATTCTTTCTCTCTTGAG TTATTTTATTGAGTTCTAATGTATTGGAGGGTGTTATAAA GATAGAATAACTAAGAAAAACATGATGACTTGGTTGAATT TGAAGAGAGTGAAGTGAATTCCAAATTGGGTATATATATA GTTGTGTAAGNNNNNNNNNNNNNNNNNNNNNNNNANNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)7(tg)10ta(tg)10 |
|---|---|
| PCR product (bp) | 292 |
| fwd primer | emh04E02/U |
| fwd primer seq. | agtctcgtttaatggcagagacaa |
| rev primer | emh04E02/L |
| rev primer seq. | tctgcaacatcactgcacaagata |
| fluor. primer | emh04E02/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-agtctcgtttaatggcagagacaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 358 | 358 |
| EPL-1 | 296 | 296 |
| LS1151 (S.linneanum) | 313 | 313 |
| LS1934 | 300 | 300 |
| LS4021 (S. incanum) | 344 | 344 |
| Nakate Shinkuro | 300 | 300 |
| Senryo 2 | 296 | 300 |
| Shironasu | 300 | 300 |
| WCGR112-8 | 296 | 296 |
| White Egg |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 45.8 |
| LW2010 | E_12 | 50.2 |
| LWA2010 | LWA_12 | 47.745 |
| LWAE2012 | E_12 | 46.005 |
| LWF2_2022 | E_12 | 55.4 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0007M08_SP6_290198 Chromat_file:SL_EcoRI_007_M08-SP6 SGN_GSS_ID:307024 (vector and quality trimmed) | 2e-07 |
| EST Name | Species | Strain |
|---|
