| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 34.5 |
| Annotation | |
| Source Name | emh01P10 |
| Source Type | genomic |
| Source Sequence | CTTTCTGGGTTTGTTTTGTTGAGGTGGGCAGTAATGGATG CATTTGCTTAGATTGTTAAAAATAAAGGCACACACTCTCC AGCGTCACCGGTTCTTTCTTAGCAAACTCGCAATGTTACT CACGTCACCATCGCGAGTTTGAGAAGGGATGTTAGCATTT GATATATTAGTTTGCTTATGTTTGTCCCATATCGAAAGTG CTTACTCCCTCCCCCTCTTTCCTTATCTATAAATAGGGCC TTTAGACCTCAAATAATGTATGCTTCCAATTTTATGATGT AATATTTTTGGGGTCATCCATGTATGATTATTTATAATCT AACACTGATTATATATACACACACACATACACACACACAC ACACACACATATGAAAGCTTAATTAATTTAAAATGGAGAT AGAAAATTTAAAATTTAAAATATCGTATGACCACGTCTTC TAGTAAATAAGAGACAATAGTGGAGTTGAAGTATAAGTTA GATTGTTGCTATATAGGGGATACGTGATTATTTAAAAGTG TAGGGTTATATGATGATGATGATGATAATAATAATAATAA TAATAATAATAATAATAATATGTTATTCTACATACTGTGA ATATTCCACCCAAAAGTTTGCTTTTAGTTCAAAACGATCA ATATGTAGAATCAGAACAAGTAATTGCTGAGATTCGCGCA GGAATATCCACTTTGAATTTTAAAGAGACGGTTCGAAAAC ATATTTATTCTGATTCAGATGGAGAAATGCACTGGAGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3t(ac)5at(ac)10 |
|---|---|
| PCR product (bp) | 300 |
| fwd primer | emh01P10/U |
| fwd primer seq. | ccctccccctctttccttatctat |
| rev primer | emh01P10/L |
| rev primer seq. | cacgtatcccctatatagcaacaatc |
| fluor. primer | |
| dye | |
| fluor. Primer seq. | |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 303 | 303 |
| EPL-1 | 302 | 302 |
| LS1151 (S.linneanum) | ||
| LS1934 | 294 | 294 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | ||
| Senryo 2 | 295 | 295 |
| Shironasu | 301 | 301 |
| WCGR112-8 | 303 | 303 |
| White Egg | 302 | 302 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 34.5 |
| LWA2010 | LWA_12 | 36.355 |
| LWAE2012 | E_12 | 37.109 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0148N18_SP6_367750 Chromat_file:SL_MboI_148_N18-SP6 SGN_GSS_ID:384961 (vector and quality trimmed) | 2e-31 |
| EST Name | Species | Strain |
|---|
