| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 44.8 |
| Annotation | |
| Source Name | emh01A10 |
| Source Type | genomic |
| Source Sequence | TAGGCCTTGCTAGCAGAAGCACAGTTAAGGCATAATATAT ATAGGACATAAATTACCATGTGGAATATCATGTAAGATAT GTTTGTCTATTTATTCAATTTTATATAAGTTTAAGTGTTT ATTTGTGCACACCCAAAATTGAAAAGAATATATTAAAAGA CATATTTATGTATTATGTCTAAAAACTAACCATTTAAATT AGGTTAACTAACTTTGGATGAATGTTATGGCATGAGTCTA GTTGCATGTTTAGCTTTCTTACTTTGTTACATCTTAAGAA CCATTCAGTGTCACAAGATTTACTACTTCCTTTTTTTTTT TTTGTGTGTGTGTGTGTTATGTGTGTGTGTAAAAACATGG TCATGTCAAGTAGTCTATAATTGTTAGGTAAAATACCTGT ATAATCAATTATGGGAAGAATGTTCATTATAGATGTGCAT TTCCTCGAGATTCAATTGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)7tta(tg)5 |
|---|---|
| PCR product (bp) | 245 |
| fwd primer | emh01A10/U |
| fwd primer seq. | ttggatgaatgttatggcatgagtc |
| rev primer | emh01A10/L |
| rev primer seq. | caattgaatctcgaggaaatgcac |
| fluor. primer | emh01A10/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atggatgaatgttatggcatgagtc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 263 | 263 |
| EPL-1 | 252 | 252 |
| LS1151 (S.linneanum) | 254 | 254 |
| LS1934 | 251 | 251 |
| LS4021 (S. incanum) | 277 | 277 |
| Nakate Shinkuro | 251 | 251 |
| Senryo 2 | 251 | 251 |
| Shironasu | 251 | 251 |
| WCGR112-8 | 252 | 252 |
| White Egg | 264 | 264 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 44.8 |
| ALF2 | AL12 | 52.6 |
| LWA2010 | LWA_12 | 45.735 |
| LWAE2012 | E_12 | 47.405 |
| NAF2 | NA12 | 41.2 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0073D16_SP6_16686 Chromat_file:LE_HBa_073_D16-SP6 SGN_GSS_ID:16686 (vector and quality trimmed) | 1e-18 |
| TomatoBAC_end | BLASTN | SL_MboI0087G10_T7_259171 Chromat_file:SL_MboI_87_G10-T7 SGN_GSS_ID:275997 (vector and quality trimmed) | 5e-15 |
| TomatoBAC_end | BLASTN | SL_EcoRI0089B13_T7_354493 Chromat_file:SL_EcoRI_089_B13-T7 SGN_GSS_ID:371319 (vector and quality trimmed) | 7e-14 |
| TomatoBAC_end | BLASTN | SL_EcoRI0070J11_SP6_341816 Chromat_file:SL_EcoRI_070_J11-SP6 SGN_GSS_ID:358642 (vector and quality trimmed) | 7e-14 |
| TomatoBAC_end | BLASTN | SL_EcoRI0107A11_SP6_316808 Chromat_file:SL_EcoRI_107_A11-SP6 SGN_GSS_ID:333634 (vector and quality trimmed) | 7e-14 |
| EST Name | Species | Strain |
|---|
