| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 87.4 |
| Annotation | |
| Source Name | emg11P06 |
| Source Type | genomic |
| Source Sequence | TTTTCCTGTCATTAATTTTTCCTTTGTCCAAACTTCCACT CAGATTGACTTAGCAGTTTGTTTTAGAGAACTGTTGTGAT ATTTCTAGAGACATTTGAGAGTGTGTAGCCAATTGATATG CGCAAAGATTGGTTGTGTATGCCTTCTTCCAAAAAAAAGG ATTGGTTGTCTATGCCGGAACTTCTAACTTCAAATACTCA CTATATAGTACAATACTCGCATATTAATTAACTGATGTTG CTATTGAAGTTTTTTGAAATTGAGAACATACTTTGGTTGT TTTCCTAAGGGATCTAAATATTTTGCTGAGGATAACATAT CATCGTCTGCTTTTATTCTTTTTCTTGCTCTCTCTCACCC TCCCTACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC ACACACACACACACACACACACACACACACACACACACAG ATTTTATGAATTTTTTTTATTTCTTTATACACACACCAAA GTAAAAAAGCCCGTCAGTTTCTAGACTTGAACTTATCATC TGCTTCTTCTCTACTCTTATCATTGTTCATGAACTTGTTG GAGTTGGTTCTATGACTATTGACTTTTCTAACCTACTTTG CCTGTCTTCTGGTAGTGGTGAGAGAAGAGAGAGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)4accctccctacc(tc)16(ac)19 |
|---|---|
| PCR product (bp) | 240 |
| fwd primer | emg11P06/U |
| fwd primer seq. | ctttggttgttttcctaagggatct |
| rev primer | emg11P06/L |
| rev primer seq. | tcaagtctagaaactgacgggctt |
| fluor. primer | emg11P06/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atttggttgttttcctaagggatct |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 239 | 239 |
| EPL-1 | 241 | 241 |
| LS1151 (S.linneanum) | 206 | 206 |
| LS1934 | 239 | 239 |
| LS4021 (S. incanum) | 211 | 211 |
| Nakate Shinkuro | 241 | 241 |
| Senryo 2 | 241 | 241 |
| Shironasu | 241 | 241 |
| WCGR112-8 | 241 | 241 |
| White Egg | 241 | 241 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 87.4 |
| ALF2 | AL12 | 97.8 |
| LWA2010 | LWA_12 | 87.918 |
| LWAE2012 | E_12 | 85.55 |
| NAF2 | NA12 | 84.5 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
