| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 44.7 |
| Annotation | |
| Source Name | emg11K04 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNN NNNNNNNNNNNNNNNNNNNNCCACTTGCTAAATTGAAAAC GGGTGGACAACACCTAGTTATTTTAGTAATAATTTATCAT GACAACATTATTGGTAATCTTTCCCAGCATCTTTTACAAA CATGTATAGAACTTCAAAGTGTTTTTTTATTTCCCTACTC ATTAATGAAGGTTTTTGCAAAATATTTTCTTTGTTGTGTG GACGCCTCCACGTGTTGGACAACAACTGATTTAGGCTGCC AGATGCCCGCTTAAGATATTACTTTGTGTGTGTGTGTGAA AGTGAGAGAGAGTGTGTGTGTGTGTGTGTNNNNNCTTTGT GAAGGGCATTGAGATTTTAGTTGATCTTATTTCTTGACTT TTATCAGTATCACTTTTCAGTTTTTATATGCTCTATTCAT TGAGTGGACATAGGATGAAGACTCACCTGACAATTAGAAC TGAGACCTTTAGTAGTAATCCCTAGTCTTAGAACTACGTG CCTCCCTAGATTTTTTTAAGGGTCACCCATCAGATTAGGA CGGGCACCTTAGTCATCTTTTGGACATTAGTTTAGTGAAT TCACGTCAGACACTGCTTTTACCCTGGAAGGTACAGATCG CCCTCCTACCTGGGGTACATGCTAGACTCAATTTAGCTCA GATGGAGTTGGTCGGTTAATAGTATCTCCCACAGTTCAGT CTCACATCATTGCATTGACTTCATATACAGTTGTTTCAAT TCAGTCTTTATCAGTTGTATGTTTACTACTTGGTCATTGC AGCCTGTTTGGATGAGAACTTATTTATGTTATTTGTCTGA AAAAGAAGTGATTAAAAGCACTTTTAAATCTTATGCCCAA ACACTATAAAAATGCTTAAAGCTATTTTGACTTAAAAGCA CCTAAAATAAGCCAATCCAAATAGGCTCTTTGTCAAAATT CTGAGGGNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)7aaagtg(ag)4(tg)8 |
|---|---|
| PCR product (bp) | 294 |
| fwd primer | emg11K04/U |
| fwd primer seq. | gccagatgcccgcttaagatattact |
| rev primer | emg11K04/L |
| rev primer seq. | taaggtgcccgtcctaatctgatg |
| fluor. primer | emg11K04/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-accagatgcccgcttaagatattact |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 340 | 340 |
| EPL-1 | 344 | 344 |
| LS1151 (S.linneanum) | 346 | 346 |
| LS1934 | 344 | 344 |
| LS4021 (S. incanum) | 336 | 336 |
| Nakate Shinkuro | 344 | 344 |
| Senryo 2 | 344 | 344 |
| Shironasu | 344 | 344 |
| WCGR112-8 | 342 | 342 |
| White Egg | 340 | 340 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 44.7 |
| ALF2 | AL12 | 53.4 |
| LW2010 | E_12 | 50.3 |
| LWA2010 | LWA_12 | 46.589 |
| LWAE2012 | E_12 | 47.648 |
| LWF2_2022 | E_12 | 55.4 |
| NAF2 | NA12 | 41.2 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0001O03_T7_127728 Chromat_file:Le-HBa001_O03-T7 SGN_GSS_ID:135345 (vector and quality trimmed) | 5e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0001O03_T7_677 Chromat_file:Le-HBa001_O03-T7.ab1 SGN_GSS_ID:677 (vector and quality trimmed) | 5e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0211J17_SP6_372932 Chromat_file:LE_HBa_211_J17-SP6 SGN_GSS_ID:390143 (vector and quality trimmed) | 2e-13 |
| TomatoBAC_end | BLASTN | SL_EcoRI0124I04_SP6_330234 Chromat_file:SL_EcoRI_124_I04-SP6 SGN_GSS_ID:347060 (vector and quality trimmed) | 7e-13 |
| TomatoBAC_end | BLASTN | LE_HBa0003E11_T7_53589 Chromat_file:LE_HBa_003_E11-T7 SGN_GSS_ID:53589 (vector and quality trimmed) | 7e-13 |
| EST Name | Species | Strain |
|---|
