| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 42.9 |
| Annotation | |
| Source Name | emf11F24 |
| Source Type | genomic |
| Source Sequence | CTGGAATTTAGACCATATACATGGGTCGAGGAGACAACCT GAGGATTAGATGATCAGCAATGCATATCCATTGATGAAGG TTTTGATATGGTGGCAGGAAATCGACAAGACCGCTCGAGA ATATGGATAGATGAGAGAGAGAGGGAGAGAGAGAGAGACA GAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGA CTCTGTTTGGGTGCCTGTGTAGGTGTGGCTCCAGAGAAAG AGGGAGTAGGGGAACACAGGGCCGAAGAGAAAGATTTAGC ATTGATAATTGTGTATTTATTTTATTTTACAATAAATATA TGTACAAGTTTTTTATTTTTCTTTTTTGGGTTTTATTAGG GGTATAATAATTTAATCGAACGTAACAAGTTTTTCTTTTT TAATTAATTTGAGTTGACGGCCCGTTTATTCATTAATAAA CTTTTCCATTGTCCAGTACATCATTGATCCGGCCCAACCC AGTAATATAACTTTGTCCCTAAAATATAGGGGTTCTATTT ACTTCAGTACAATTCCACCTGAGAATATTGACTTTCCAAA TTCGTATTAATGGTTGTTGCACAGTACATTCGGCTCCTGA CCATTGTTCTCCTTTGTTTGCTTCTCTGGTAAGTCGATCC TTGTCTTCGCTTTTCCATCTCCAAATTTTTGTCTGTCTCA CCTTCGTTGTGCGCAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)5gg(ag)6ac(ag)7gg(ag)12 |
|---|---|
| PCR product (bp) | 162 |
| fwd primer | emf11F24/U |
| fwd primer seq. | aaggttttgatatggtggcaggaa |
| rev primer | emf11F24/L |
| rev primer seq. | ttctctggagccacacctacacag |
| fluor. primer | emf11F24/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atggttttgatatggtggcaggaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 169 | 169 |
| EPL-1 | 169 | 169 |
| LS1151 (S.linneanum) | 205 | 205 |
| LS1934 | 169 | 169 |
| LS4021 (S. incanum) | 169 | 169 |
| Nakate Shinkuro | 171 | 171 |
| Senryo 2 | 169 | 171 |
| Shironasu | 171 | 171 |
| WCGR112-8 | 171 | 171 |
| White Egg | 171 | 171 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 42.9 |
| EW2009 | LG11 | 28.8 |
| LWA2010 | LWA_12 | 44.818 |
| LWAE2012 | E_12 | 45.613 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
