| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 0.0 |
| Annotation | |
| Source Name | emf01H09 |
| Source Type | genomic |
| Source Sequence | CTGTGTTCAGATATTAGCCTTTGAAGTATTACTTTTTCTC TTCTCACTTCTAGAGTACTTGCTCACTCTTATTTGCATCT CTGAAAATGCAGATTTTTGAAAACTCTAATCATGTCAATG TAAGCCATATCATCCATGATTTATCATTTGGGCCCAAATA TCCAGGCATTCACAACCCACTAGACGGAACATCACGAATT CTCCGTGGAGCAAGTGGCACATTCAAGTATTACATTAAGG TTTGTGAAGATCTAATTTAGTGTTTAGTTTGAATACATTG CATAGAATATTTCAACATAGCCTGGACCATTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTG AACATAAGGAGCCTTGACTGACTTTTTAAAAATGGTGGAA TGAACAACTCAACCCAACTTCCTCAAAGTGATGGAAAAAA CAAATTTGTATTTCTTGGCGTATGACATATGAACCAAATT GAAGTCCAAACCCTGCATTATTTTCCTTTAATGCAGAGAC CTAAATATATTATTCTTCACCACGGCTAAATATCTGCAAT TGTTGGCAGCCAGTGATAAAATTTGGCGGATTTGTTCTTC TTTTGAAATCCTGTTCCATGGGCCAGCAGTGGCTTTTCCC ACTTTTTATTCCTTTATGACTTGGTCACTTGGACCAGTAT ACCCTATCCTAACTCCACTTAGTGGGAACGAATGAGCAAG TAGGGGGTGGCAACTAAAGAGGTAGCGAGACTGACCGCAA TTTCAGGATTCACTGGGTATGTTGTTGTTCATGATGACTT GGACCAGTAACCTCACAGTTGGAGGTTAAAGATCTCCTCC ACTAGGCCAACCCTAGACCATTTAGGTGTTTTGTATGTTG CGAAACTAAATAAACAAATAAAGTGATTCCTCTCAAGCGG TAACCTCTTAGATGGGACAATTTACAAAATAAAGAGAGGG CTTAATTCAAGTCTTTCTGCCACTTAACACAACTATTTCC ATGTATTTTGGATAAAGAAAAAATTGAAGACGTGAGGAAG CATGTTGTAGACTTGAAATAGGCATGTCTCCTTTATAACA AGATCAGACTAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)22 |
|---|---|
| PCR product (bp) | 257 |
| fwd primer | emf01H09/U |
| fwd primer seq. | tatccaggcattcacaacccacta |
| rev primer | emf01H09/L |
| rev primer seq. | gggttgagttgttcattccaccat |
| fluor. primer | emf01H09/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-attccaggcattcacaacccacta |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 275 | 275 |
| EPL-1 | 265 | 265 |
| LS1151 (S.linneanum) | 248 | 248 |
| LS1934 | 263 | 265 |
| LS4021 (S. incanum) | 271 | 271 |
| Nakate Shinkuro | 263 | 263 |
| Senryo 2 | 263 | 265 |
| Shironasu | 263 | 263 |
| WCGR112-8 | 266 | 266 |
| White Egg | 267 | 267 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 0.0 |
| ALF2 | AL12 | 0.0 |
| LW2010 | E_12 | 0.8 |
| LWA2010 | LWA_12 | 1.617 |
| LWAE2012 | E_12 | 1.649 |
| LWF2_2022 | E_12 | 0.6 |
| NAF2 | NA12 | 0.0 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0095G23_T7_28365 Chromat_file:LE_HBa_095_G23-T7 SGN_GSS_ID:28365 (vector and quality trimmed) | 3e-12 |
| EST Name | Species | Strain |
|---|
