| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 58.1 |
| Annotation | |
| Source Name | emd18C06 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN CCAAAAACTTTGGAAGCCCATTGTTTTCCTTGCAATTGAG AAATTTGCAGAGCATTACTGCATTAGGGTTTCTGAGGTTT AACATCGCCGTTGGCTTCTTAGAGCTTTACAATCTTCAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGA AGCAATGGGTAAGTCTAACCATAGTTGTTCCTAAATCTTA CATGTAATTTTGTACTGTAAGGAATTTATTGATTTTCAAT TTCTTTTGTATATAGCAAGAATCAAAGTTCATGAGCTGAG ACAGAAATCCAAGACTGAGCTTTTAGCTCAATTGAAGGAT CTTAAAGCAGAACTTGCTCTCCTCCGCGTCGCCAAAGTCA CTGGCGGTGCCCCTAACAAGCTCTCCAAGATGTAACTTTT CTACCCTTTTGCTCTTTGTGAATTTAACATGAATTAATTT GTTGAAACCCCTTTTGGTTATCGAACCCCCTTAGTGAAAA TACTGGTTAAATGACAGGTTTTTATGTGGGAGATACGGTA ATGTTTCTGAATTGAAATGTGGGTTTGATGCAGTAAGGTG GTGAGGCTATCAATAGCACAAGTGTTGACTGTNNNNNTAT CAATAGCACAAGTG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)18 |
|---|---|
| PCR product (bp) | 279 |
| fwd primer | emd18C06/U |
| fwd primer seq. | gtttctgaggtttaacatcgccgt |
| rev primer | emd18C06/L |
| rev primer seq. | cggaggagagcaagttctgcttta |
| fluor. primer | emd18C06/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atttctgaggtttaacatcgccgt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 299 | 299 |
| EPL-1 | 281 | 281 |
| LS1151 (S.linneanum) | 270 | 270 |
| LS1934 | 295 | 295 |
| LS4021 (S. incanum) | 287 | 287 |
| Nakate Shinkuro | 281 | 281 |
| Senryo 2 | 282 | 295 |
| Shironasu | 295 | 295 |
| WCGR112-8 | 295 | 295 |
| White Egg | 295 | 295 |
| PI 286106 | 283 | 283 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 58.1 |
| ALF2 | AL12 | 68.1 |
| EW2009 | LG11 | 20.8 |
| LWA2010 | LWA_12 | 59.602 |
| LWAE2012 | E_12 | 58.208 |
| N28F2 | E_12 | 59.0 |
| NAF2 | NA12 | 53.1 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
