| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 49.9 |
| Annotation | |
| Source Name | emk05B08 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNN NNNNNNNNNNNNNNNNNNNNAATTCCAACATTACTTATAT GTTATATGGGTCATTTCTAAGCCATAGGAACATTCACCAA GTCATTTAACACAATTAATAACAATATTGAATTTATAGGC TCCAAATCAAAATCTTGATTCGACTAAGGTAATTTGATCG ATTCTAACCAAACTTTCTTGACTTATATACTCAATTAACA TCAACAAACATGTTTCTAAACTCAAATTGATCCAAAGAGC TCAAATACAAAATATACCATTTTGGAGCCTAAATTCCAAT AACCTTCATTCATGACAAACGAATGGTTCCTAATCGATAA TTCTTGGTTATTATGGTCCCTTAACATCCCTCAAGCCATT CATAATCTCAAATTTAATCAAAACAAACAAAATCTCAACT TACCTTCATAAGAGCTTCACAACTTCAAATCGTTGCGCCG GAATTTCTACGCGTTTTCGGGCCGAACTATTGCTTCCACG TTGCTCACAAGACTTGATATGCTAGGTNNNNNCTTGGGAG GGTACACTGGCCTTGTATGACTATGGAGTTTAGCAGTTTG TATGACTATGCATGTATGATTGGTATGCTGGCCGATTTTA TCGCAGCGGTGACCTTGTCGGCCCGCTTATATATATATAT ATATGTTGTGCATGTTGAGTTTTCTGTATGCAGGATTTTG GGTTAGTTCATAAACAAATGAAATTCTACCAAAATTTCTG TAAATAATTTAGTTGTTATAACTGGAATCTGGCTTAGTGT GTATGTTAGGGTGCGCCAATCGGGCACTAGTCACGGCCCA CGAGGTTGGGTCGTGACACATCATGTCAAGAGTCTAAAGT AAGAATGTAATTTAGACAATGACTCCTCATATATCATCTA CGTCTCATCTACTCATAGTACCCTCAAAAACACACTCACG ACGGCCTAGAATTCAACCGGCGCGTCTAGCGTCAAATTAT TCAATTTTTGCTACATTGACCCAAACGAATCCAACATGCT TACGAACCNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)8 |
|---|---|
| PCR product (bp) | 205 |
| fwd primer | emk05B08/U |
| fwd primer seq. | gtatgattggtatgctggccgatt |
| rev primer | emk05B08/L |
| rev primer seq. | tggcgcaccctaacatacacacta |
| fluor. primer | emk05B08/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atatgattggtatgctggccgatt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 212 | 212 |
| EPL-1 | 212 | 212 |
| LS1151 (S.linneanum) | 206 | 206 |
| LS1934 | 208 | 208 |
| LS4021 (S. incanum) | 202 | 202 |
| Nakate Shinkuro | 212 | 212 |
| Senryo 2 | 212 | 212 |
| Shironasu | 208 | 208 |
| WCGR112-8 | 212 | 212 |
| White Egg | 212 | 212 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 49.9 |
| LW2010 | E_11 | 53.9 |
| LWA2010 | LWA_11 | 51.191 |
| LWAE2012 | E_11 | 54.084 |
| LWF2_2022 | E_11 | 67.3 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0124M24_SP6_194147 Chromat_file:SL_MboI_124_M24-SP6 SGN_GSS_ID:210973 (vector and quality trimmed) | 2e-07 |
| TomatoBAC_end | BLASTN | LE_HBa0224O01_T7_377365 Chromat_file:LE_HBa_224_O01-T7 SGN_GSS_ID:394576 (vector and quality trimmed) | 3e-06 |
| TomatoBAC_end | BLASTN | LE_HBa0130C17_SP6_64256 Chromat_file:LE_HBa_130_C17-SP6 SGN_GSS_ID:64256 (vector and quality trimmed) | 3e-06 |
| EST Name | Species | Strain |
|---|
