| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 68.6 |
| Annotation | |
| Source Name | emj04D04 |
| Source Type | genomic |
| Source Sequence | CCTACTCTGTTGCTGCTGAAACTGCCTATCCTAGAAATTT GTTGCTGAACTGAATGACCTAGCCCTCTTAGGCGACCCTC AAGCTAAATGGAATTTCAATTACAATGACCAACTAAATTA CCAAAATTTTGACAAAGTCTCCTCTGTTTTACTGACTACC CACCTGCATATAAAAAATCCTAGCCTACAATACATACATA CATACATATATACATACATATATATATATATATATATATA TATATATACGGGTCGACAAGGTCACCGCTGCGGTTAAACC TTCCAACATATATAACATACTTACATAATATACAGACTGA CGTCTCCCATCCTCACAAGAGTACACAGACCTCTATACGA ATAGACCGAATCATAGGACGGGATTGGGCCATGGCAATAG AATCTGGGAGGGAGGACTAATAATTGTAGAGAAATGTATT TGATGAATTTTTACAATGTTTAAAATAATGA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3cataca(ta)15 |
|---|---|
| PCR product (bp) | 238 |
| fwd primer | emj04D04/U |
| fwd primer seq. | aatgacctagccctcttaggcgac |
| rev primer | emj04D04/L |
| rev primer seq. | tatgttggaaggtttaaccgcagc |
| fluor. primer | emj04D04/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-attgacctagccctcttaggcgac |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 239 | 239 |
| EPL-1 | 239 | 239 |
| LS1151 (S.linneanum) | ||
| LS1934 | 247 | 247 |
| LS4021 (S. incanum) | 236 | 236 |
| Nakate Shinkuro | 243 | 243 |
| Senryo 2 | 239 | 239 |
| Shironasu | 241 | 241 |
| WCGR112-8 | 237 | 237 |
| White Egg | 237 | 237 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 68.6 |
| ALF2 | AL11 | 79.3 |
| EW2009 | LG01 | 21.4 |
| LW2010 | E_11 | 71.3 |
| LWA2010 | LWA_11 | 69.151 |
| LWAE2012 | E_11 | 68.712 |
| LWF2_2022 | E_11 | 88.1 |
| NAF2 | NA11 | 97.5 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
