| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 48.9 |
| Annotation | |
| Source Name | emi04H10 |
| Source Type | genomic |
| Source Sequence | CTTTACACTCGGGGTGATTTGAAGATTATTTTATAGGGAT TGGTTTGGTATTTCAATTGTGGATCCCAATATTTCCCCGT TTTAGTTGTAATTTGTAATATCACCTGTTTTCTGAGATTT TATAGTCAAACCAGTCATGATGATATTATGACTTATTTTT TAACAGTTAACCAATATCAAGAAGCAATCGTAGGTGAAAA TCTTAGATAGATTGATTCGGAGCAAGAGACATTAGATGCC AGGTAGGCTAGACTTTTATATATATATATATATATATATA TATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTA TGTATATATATATATATGATGTTATGGGATGTTAGTTGTT GTATTGGGGACTGTGTTGGCTATAACTACTATATTACCTA AGTTCTTACATTATATGCCTACAAAAGGGCCTGAAAGGGG ATGTTTCGAGCTGTGAACATGTGATAGATATGTACACTGA G |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)18(tg)13tatg(ta)7 |
|---|---|
| PCR product (bp) | 164 |
| fwd primer | emi04H10/U |
| fwd primer seq. | ttcggagcaagagacattagatgc |
| rev primer | emi04H10/L |
| rev primer seq. | ccaacacagtccccaatacaacaa |
| fluor. primer | emi04H10/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atcggagcaagagacattagatgc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 176 | 176 |
| EPL-1 | 171 | 171 |
| LS1151 (S.linneanum) | 221 | 221 |
| LS1934 | 179 | 179 |
| LS4021 (S. incanum) | 154 | 154 |
| Nakate Shinkuro | 172 | 172 |
| Senryo 2 | 171 | 171 |
| Shironasu | 168 | 168 |
| WCGR112-8 | 176 | 176 |
| White Egg | 205 | 205 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 48.9 |
| EW2009 | LG01 | 57.2 |
| LW2010 | E_11 | 52.1 |
| LWA2010 | LWA_11 | 49.751 |
| LWAE2012 | E_11 | 55.449 |
| LWF2_2022 | E_11 | 63.8 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
