| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 49.3 |
| Annotation | |
| Source Name | emi02E03 |
| Source Type | genomic |
| Source Sequence | CTCGTTTCCTTGGATTTTGGTGCTGAGGTGAGCCTTCACA TTGTTCGTAGAGGCTACTACTTCAGCTTTATCTAGTATAG TTTATGTTTTTCTTCTTTTTGGGGGTTATATACCCGTCAG TTAAACTCATATCACTCTATTAGATGCTCCATGACCTTAT TGTGGGATTTGGGCTAGAGATATTTTATTAAGTGACCTTT TCCTTTCATAAATTGATATGCGATTTTTGTTTGCTAGTTA CTCTATTGTTATGAGTATTGATGAGTTTTGGAGTTGCTTA TATATTCTTAGTGCTTGGATAGTTTGGATGTGTATGAATA TTTGGTTCTCCCGACAAATAGTATGGCGGGTGCCAGTCAC ATCTAGGGGTATTTTGGGATGTGACAAGTCTTCCCTCTAT ATGCACTTTTCTATTCCCTCACTTTCATTTTCTAGTTTTC TACCCATCTACTCTATTGTATGACCCAAGACATTTTCATC AATAAATATTATGTTGTTCCAAACGAAATGTGTTTAATTG GATCATTTATCATCAAATTGATCCAACCTCCAGCAAAAAG AGGCTCCATATTAGGGCGTATCTTGAATGTTACCAACTTG GCGTGTATATATATATACATATATATATATATATATATAT ATATATGTTTTTGTGTGTGTATATATATATATATATAACA AACTAATATAGTTTTCCTTTTATTTTCTTTATTTTTTGTT GATCAATATTAATCCCAAAAGAATGTTGATTTGTGTTGAC TTGCAAACTAGATGACTCACGTTACAACCTTCGATCTAAA AGAAAGATGGCTGATGGAGAAGAATTTGATGATGCTGGAA ACATAATGATACCTATAAAAACACCAAAGGTTCTTGAAAT ATGACTCAAAATGACGAGAGAATGGATCACATGGCACAAG AATTGAAAACTGTAAGGGAGAAATTACGTCAAGTACGAGA CTTGGCCAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)6ca(ta)13tgtttt(tg)4(ta)9 |
|---|---|
| PCR product (bp) | 257 |
| fwd primer | emi02E03/U |
| fwd primer seq. | cttgaatgttaccaacttggcgtg |
| rev primer | emi02E03/L |
| rev primer seq. | ccagcatcatcaaattcttctcca |
| fluor. primer | emi02E03/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-attgaatgttaccaacttggcgtg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 264 | 264 |
| EPL-1 | 262 | 262 |
| LS1151 (S.linneanum) | 250 | 250 |
| LS1934 | 262 | 262 |
| LS4021 (S. incanum) | 239 | 239 |
| Nakate Shinkuro | 264 | 264 |
| Senryo 2 | 262 | 262 |
| Shironasu | 270 | 270 |
| WCGR112-8 | 264 | 264 |
| White Egg | 260 | 260 |
| PI 286106 | 260 | 260 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 49.3 |
| LW2010 | E_11 | 52.6 |
| LWA2010 | LWA_11 | 50.304 |
| LWAE2012 | E_11 | 55.185 |
| LWF2_2022 | E_11 | 64.4 |
| N28F2 | E_11 | 57.4 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0085A11_T7_22677 Chromat_file:LE_HBa_085_A11-T7 SGN_GSS_ID:22677 (vector and quality trimmed) | 2e-10 |
| TomatoBAC_end | BLASTN | SL_EcoRI0021K11_T7_229105 Chromat_file:SL_EcoRI_021_K11-T7 SGN_GSS_ID:245931 (vector and quality trimmed) | 6e-10 |
| TomatoBAC_end | BLASTN | SL_MboI0013J03_T7_212175 Chromat_file:SL_MboI_13_J03-T7 SGN_GSS_ID:229001 (vector and quality trimmed) | 6e-10 |
| TomatoBAC_end | BLASTN | LE_HBa0105G05_SP6_68264 Chromat_file:LE_HBa_105_G05-SP6 SGN_GSS_ID:68264 (vector and quality trimmed) | 6e-10 |
| TomatoBAC_end | BLASTN | LE_HBa0105F05_SP6_68216 Chromat_file:LE_HBa_105_F05-SP6 SGN_GSS_ID:68216 (vector and quality trimmed) | 6e-10 |
| EST Name | Species | Strain |
|---|
