| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 48.4 |
| Annotation | |
| Source Name | emi01H05 |
| Source Type | genomic |
| Source Sequence | NAGTATCAAAAACTGTAAAGAACTAGACTAAGTTACCAGG TCATCAGCAATTTTTCATACCTTTACACTTACGAACTTTA GACGCACAAAAGGCAAAATATGAATAATTTCTTACATAAC TTCTCAGTCAAATTCTACAAACATACAACCAAATTAACAT GATCCAACCATACCACAACGTGTCTCTTGACAAATGGAAT AATTTAGACACAAATTTCACTTAATTCCATTGAGAAATGA CTGAGATCGCAATGTAAAATTTTCACTCATTTTTTATATA CAACCAGTGAAAAAGTAGTGGTTATACCTTGAAATACATG TTGAATCCTGAATCTGACTTCATTGCGGCATTTCTTTTGA AAATTCAAGTCACTTAGACCTTTGAATCACCCAAACCTGA TAAGAAATGCTCTCAAAATTTCCATGTAAAATTGGAGAAA ACATGTATATATATATATATATAGATATAATCTTCTGGAA ACATGTATATATACAGCCAGCTGCTCCCTTTTGCCACCTC AATGCCACATGGCAACACTAGGTCGTGCCATATGGCATCC CCAAGACATGCCACATCACTCCCCTTTTCCCTAACCTTTC AATCTCTTTTTTTTGCTGTTTCGGATTTTTTTGGACTCTT ATTTTTGCAATTGAACTATGTAATCATATGGATTTTGACA TTTCGGATCCAACAGTACAATCATAATTTCCAACGGAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)9gatataatcttctggaaacatg(ta)4 |
|---|---|
| PCR product (bp) | 266 |
| fwd primer | emi01H05/U |
| fwd primer seq. | atctgacttcattgcggcatttct |
| rev primer | emi01H05/L |
| rev primer seq. | aggttagggaaaaggggagtgatg |
| fluor. primer | emi01H05/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atctgacttcattgcggcatttct |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 270 | 270 |
| EPL-1 | 267 | 267 |
| LS1151 (S.linneanum) | 268 | 268 |
| LS1934 | 268 | 268 |
| LS4021 (S. incanum) | 257 | 257 |
| Nakate Shinkuro | 268 | 268 |
| Senryo 2 | 268 | 268 |
| Shironasu | 268 | 268 |
| WCGR112-8 | 268 | 268 |
| White Egg | 267 | 267 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 48.4 |
| ALF2 | AL11 | 57.3 |
| LWA2010 | LWA_11 | 49.384 |
| LWAE2012 | E_11 | 62.19 |
| NAF2 | NA11 | 66.9 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
