| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 49.4 |
| Annotation | |
| Source Name | emh11G09 |
| Source Type | genomic |
| Source Sequence | ACAAAAATATTCTTCATCCATCTATTGGACGTAAAATGTC TCTGTCATTTATTTTTGGGTCCAAAAATATTTTTTATTCA ATTTTTTGGCTCACTTATAACCTTGAAACTAACAACTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATTTTATT CCAAAAGAAAATGAAATATAATAAATATTTAAAAAAGAAA AAAGAAGAAATGAGGGTTCTCAATTTTAAGGGTATAAGTG AGCTAAAAAGATGAAATGAATAAAGAACATTTTTTAACCC AAAAGTGGATGACAGAAGCATTTTAAGCCCAAGTGGATGA GAAGGATTTTAGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)17 |
|---|---|
| PCR product (bp) | 283 |
| fwd primer | emh11G09/U |
| fwd primer seq. | gtctctgtcatttatttttgggtcc |
| rev primer | emh11G09/L |
| rev primer seq. | tcatccacttgggcttaaaatgct |
| fluor. primer | emh11G09/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atctctgtcatttatttttgggtcc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 282 | 282 |
| EPL-1 | 282 | 282 |
| LS1151 (S.linneanum) | 273 | 273 |
| LS1934 | ||
| LS4021 (S. incanum) | 303 | 303 |
| Nakate Shinkuro | 280 | 280 |
| Senryo 2 | 279 | 279 |
| Shironasu | 280 | 280 |
| WCGR112-8 | 279 | 279 |
| White Egg | 274 | 274 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 49.4 |
| ALF2 | AL11 | 58.8 |
| EW2009 | LG01 | 56.6 |
| LWA2010 | LWA_11 | 50.374 |
| LWAE2012 | E_11 | 55.12 |
| NAF2 | NA11 | 66.9 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
