| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 52.9 |
| Annotation | |
| Source Name | emh11C20 |
| Source Type | genomic |
| Source Sequence | ACTAAAACAAAAGACATGTGAAAAATAACACACTTACACT TAACAGTAGACAAAAAAAAAACCTTCCTCCTCCACCCCTT TATTCTTTGTCCCCGTTGATCTTATTTATCTGAAGGAGAT TGGGGAAACACCAACTCCACAAAACCCACACACACACACA CACACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGACAGAGAGAGAGAGTGCAACGTTACAATTCTG TAATGGGGAAAGACAGAGAATGGCAGGTAAAATTGAGGGG CTAATAAGCAAGACGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)9g(ag)21ac(ag)6 |
|---|---|
| PCR product (bp) | 200 |
| fwd primer | emh11C20/U |
| fwd primer seq. | ctccacccctttattctttgtccc |
| rev primer | emh11C20/L |
| rev primer seq. | tacctgccattctctgtctttccc |
| fluor. primer | emh11C20/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atccacccctttattctttgtccc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 199 | 199 |
| EPL-1 | 201 | 201 |
| LS1151 (S.linneanum) | 194 | 194 |
| LS1934 | 199 | 199 |
| LS4021 (S. incanum) | 169 | 169 |
| Nakate Shinkuro | 199 | 199 |
| Senryo 2 | 199 | 199 |
| Shironasu | 199 | 199 |
| WCGR112-8 | 200 | 200 |
| White Egg | 199 | 199 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 52.9 |
| LWA2010 | LWA_11 | 53.846 |
| LWAE2012 | E_11 | 51.94 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
