| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 47.2 |
| Annotation | |
| Source Name | emh02A04 |
| Source Type | genomic |
| Source Sequence | GATCTTCTTAGGAAAAATATATTTTGCTATTTTTAAATTT TGATTTCATTATTTTTATCTGCTCAATAGAGTCAACAGCA AAATATGATAGTGGATGTCCAGCAAAATCAAGCACAAACA TTTAGACAATCACAGGTACATTAATATTCATGAAATTAAA TATTATTCCTGGTTATATCATACCCCACATCACGTAATAA ACTAATTAAGTGATATATTTTGCAGACACAATTTACTTTT GGTCAAAGTAGTGACAACTCTATCAAGGACTTCTGGTACA ATATGTACAATTCTACCAGGTTAATTTCTTTCGATATTCA TCCTTTTAATTATTGCTTGCAAGATAATGGTTTATCCGTT TAGAAAAATGATGACAATATAATTATAACGATCAATGATT TTAATATGACAAAGTGTCATATACAATGAGTATATTTTAT TATTTATGTTAGTATAATTCTTGTTTATGATATGATTTCT AAGCGCACTCGCACTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTTCTGTCTCAGGCCTAACTCGAGTACTC CACTCACGATTACAGACCCAGAATTGAACAATCCCTCCAA TTGGAGTTGGAGTATACCCCTTTAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)19 |
|---|---|
| PCR product (bp) | 126 |
| fwd primer | emh02A04/U |
| fwd primer seq. | tatgatttctaagcgcactcgcac |
| rev primer | emh02A04/L |
| rev primer seq. | agggattgttcaattctgggtctg |
| fluor. primer | emh02A04/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-attgatttctaagcgcactcgcac |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 130 | 130 |
| EPL-1 | 130 | 130 |
| LS1151 (S.linneanum) | 106 | 106 |
| LS1934 | 126 | 126 |
| LS4021 (S. incanum) | 118 | 118 |
| Nakate Shinkuro | 118 | 124 |
| Senryo 2 | 124 | 130 |
| Shironasu | 128 | 128 |
| WCGR112-8 | 126 | 126 |
| White Egg | 128 | 128 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 47.2 |
| ALF2 | AL11 | 55.4 |
| EW2009 | LG01 | 61.6 |
| LWA2010 | LWA_11 | 48.201 |
| LWAE2012 | E_11 | 56.761 |
| NAF2 | NA11 | 62.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0045M12_SP6_245773 Chromat_file:SL_EcoRI_045_M12-SP6 SGN_GSS_ID:262599 (vector and quality trimmed) | 9e-08 |
| EST Name | Species | Strain |
|---|
