| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 50.9 |
| Annotation | |
| Source Name | emg11M21 |
| Source Type | genomic |
| Source Sequence | CCTGTCAAATTCCAAAGCTTGTATGGGCTAGTCCAGATGG GGAGGGGCAGCCCGTATTGACAGCTTTAGAATCATCATTA CTTGATTCCAAGGATCAATTCCCTTGGAATGCCATCTCTT TTAATAAAAGGAGACATCCGAATATCTCAAAGACTCATAC AAGCCTACTGCCTTCAAGACCATCTTCAAACTCTTGACTA TTAAAAAATTTGTTGTAATTATTTTGTCTTACTATGGAAA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAAAGAGAGGATTGTATTAATAAGAAAAAGCAAACA AAAAAAAATTAGAGTAGTTTAAGTTTAATTTATTATAACT ACAAAATTTCAAAGGCTTGAAGAGATTATCCTTGCAACCT AAGGGGACTGGACGTAGGACTCACATTGAATATGAATCTC TATAAATATCCGGTGTTGAACTTCCTTTTATGCTCGTTAA TTCTACAAACTATTTTTATTGCTCATAGTCGACTATCACT TAAGTTAGCTGACTAACGGTTAATATTTTAAGTAAAAAGG AAAGAAATTTCAATTCACCCCCACCCCCACCTTGCACTTT CAATTGGTATCAGAGTCTAGTCTCATTGTATTTTCTATCT AACCATAGGTGAATAAAGATCATAGGAAATCATCATCAAG CAATTGGAGCCTTGTTTCAAGATGGAACTTCTCAAACCAG ACCTCCCTACTTCAATGGGAAGAGCTTCTGCTAGCAAGGC A |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)23aa(ag)3 |
|---|---|
| PCR product (bp) | 261 |
| fwd primer | emg11M21/U |
| fwd primer seq. | caagcctactgccttcaagaccat |
| rev primer | emg11M21/L |
| rev primer seq. | gtcctacgtccagtccccttaggt |
| fluor. primer | emg11M21/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atagcctactgccttcaagaccat |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 260 | 260 |
| EPL-1 | 262 | 262 |
| LS1151 (S.linneanum) | 257 | 257 |
| LS1934 | 267 | 267 |
| LS4021 (S. incanum) | 266 | 266 |
| Nakate Shinkuro | 264 | 264 |
| Senryo 2 | 262 | 262 |
| Shironasu | 283 | 283 |
| WCGR112-8 | 258 | 258 |
| White Egg | 269 | 269 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 50.9 |
| EW2009 | LG01 | 51.2 |
| LW2010 | E_11 | 54.5 |
| LWA2010 | LWA_11 | 52.034 |
| LWAE2012 | E_11 | 53.86 |
| LWF2_2022 | E_11 | 70.7 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
