| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 48.9 |
| Annotation | |
| Source Name | eme01A08 |
| Source Type | genomic |
| Source Sequence | CCCTTCGTTGCCTTCTACTTGGAAAGGACGGATGAAGCTG ACGCAAGGACTATGCTAGAATGGGTCACGACTGCGTGTGC ACGGACCATGCAGGTAGACATGGGTCGTGGCTGTAGCCCG TGGAGGGGACGCAAATTTGGCTCACATCAAAAAATAATAA GAATTTGGCAAAGTGTTGAAGCACGGACCGTTATACGGTT CATATAACTCCATACGCATTATGGCAGCTGACCGTGGACA TGAAGCAAGAGAAATTACCATCGAAAAATGAGCAAAATTG ACCAAGTGGGAATGAATGGACATCTAGATGGGTCGTGTGA CGAACCACGACCCATGGCAAGCATCATGCAAACGGAGGAC ACAACTGGACACTGTTCCTTGACCAAGTGATGGACCATAG ACCATGTAACTGTCTGTACAAGCCCACCCGACCGTATAGG GTCCCGTACCCATGCCGATAACTTTTTATTATTTTATTTT AAAATAGCTTTTCTCACTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTTTATATATATATATGCCGTGAAAGAATGTA CTGATTGGAAAAAGAATCCTAAAATAGAAATTTGGGGTTT TAAACCTAGTCT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)16tt(ta)6 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme01A08/U |
| fwd primer seq. | cactgttccttgaccaagtgatgg |
| rev primer | eme01A08/L |
| rev primer seq. | ccaatcagtacattctttcacggc |
| fluor. primer | eme01A08/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-ACACTGTTCCTTGACCAAGTGATGG |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 204 | 204 |
| EPL-1 | 202 | 202 |
| LS1151 (S.linneanum) | 217 | 217 |
| LS1934 | 206 | 206 |
| LS4021 (S. incanum) | 202 | 202 |
| Nakate Shinkuro | 202 | 202 |
| Senryo 2 | 203 | 203 |
| Shironasu | 206 | 206 |
| WCGR112-8 | 202 | 202 |
| White Egg | 208 | 208 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 48.9 |
| LW2010 | E_11 | 52.4 |
| LWA2010 | LWA_11 | 49.882 |
| LWAE2012 | E_11 | 55.8 |
| LWF2_2022 | E_11 | 65.0 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
