| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 15.3 |
| Annotation | |
| Source Name | emd05B11 |
| Source Type | genomic |
| Source Sequence | GGTGAAACTGGTTGGTAGAAAAGGTTTGGGTCCATCTGTT GATTCTATAATTGCTTCAATTAAGGCTGAGAGGGGAAGAC GCAAACCTGGTACACTTAAACCTGGTATGTCATCCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGT GTGTGTGTGTGTGTGTGTGTGTATTTCATTCTCTCTCCCT CTCTCGGTATAGGGGAAAGAGTAAGTAGCTTCATTTGTTC CTTTTTAGAAACTGTGGCACATATCAATTTAAGCCTAAAG AATTTTCCTTAAATAGGTGTCATAAAGTCAAAAGCCACCA CTCTCAAGCGAAAAATAGTAAGGTATGAGCACCCACCCTC TTTCCCTTTCCCTTTCCTCCTTTATCCGTAGTTTGTTCTT TTCTTTTCTTGTTGGGAGTGTATCTCAGCTTTCTCTGTAT CCTGTTTTGGAATTATTTCAGGAAGGCTAAAGTTGTAAGC GGAGGCAATAGAACTTCTTCTTCCCCTGCTTCTAGCAGCA GGATT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)20(tg)13tatttcat(tc)4c(ct)3 |
|---|---|
| PCR product (bp) | 287 |
| fwd primer | emd05B11/U |
| fwd primer seq. | aattaaggctgagaggggaagacg |
| rev primer | emd05B11/L |
| rev primer seq. | gcttgagagtggtggcttttgact |
| fluor. primer | emd05B11/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-ATTGCTTCAATTAAGGCTGAGAGGG |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 297 | 297 |
| EPL-1 | 297 | 297 |
| LS1151 (S.linneanum) | 304 | 304 |
| LS1934 | 297 | 297 |
| LS4021 (S. incanum) | 287 | 287 |
| Nakate Shinkuro | 297 | 297 |
| Senryo 2 | 297 | 297 |
| Shironasu | 299 | 299 |
| WCGR112-8 | 299 | 299 |
| White Egg | 299 | 299 |
| PI 286106 | 283 | 283 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 15.3 |
| ALF2 | AL11 | 22.0 |
| EW2009 | LG01 | 99.6 |
| LW2010 | E_11 | 13.8 |
| LWA2010 | LWA_11 | 14.664 |
| LWAE2012 | E_11 | 20.414 |
| LWF2_2022 | E_11 | 17.1 |
| N28F2 | E_11 | 25.2 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
