| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_10 |
| Marker Type | SSR |
| Map Position | 50.9 |
| Annotation | |
| Source Name | emh11L01 |
| Source Type | genomic |
| Source Sequence | ACCCTCCCGGGGTGTGACAGTCAATCCCCCTTTTAAAAAA AAGGTGATATCACGCACCAATCCTTGATTGCCATGTGTGT GTGTGTGTGTGTGTGTGTGTATATATATATATATATATAT ATATATATATATATATACTAGTTTTAGTCTATATGCTTTG CACGTATGGGTGTGCAAAAGCCGAACCGACCGATAAATCG AACCAATAAAAACGTTATTGATTTATTGTTATTCGGTTAT TAGGTTATCGAATTTTTAATGGTTTTAGAAAAAAGATTTT TGGATTATCGGTTCGATATCAATTTTTACTATTGGGTAAA CCGATAACCCAATAAGATTATAATAATTTACTATTTTATC CCTTCGTATTAAATATTAATAATTTAATAGTAATAGGACA TTATTGCAATACTTTATATATTTTAATATTTACGGTACAA TGATTCGGGAAATAAGATTTTCCTTTTCTTAAAATTAAAA CCGAAAAAAAAAAAATACACCCCCTTCTTTCTTACCGAGA ATTTCCGAAAAAGACTAATTTATTTTTACGACGGGTTCTG TATTTCTATATTTTGTATATAATTGTATATAAGATATTTT GTATATAATCTATAAGAGAAGTCTTTTCCCTTTACTATTA TATGGTAAATGAGACCAAAAAGACGAAATGAGCAGAAATT TGTATATATCAATGGAGGAAATAAGCATGTGGAAAACAAG ACAGGAATTCTCTACAATTACACTGTGGAACAATTGAAGG GATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACTT CTTATGGCTAGATGTTGTTTGGTTCTGCTAATAATTATAT GTACATAATCACTTTTGGGTTCCTACTTGGGTGTGAATTC ATATTTGGGTGTTGTTGGGGCAAATTATTTCCTCAAGAAT TTCATTCTTGGCCAATAAGAAAAGCTTCTGCTAGCAAGGC CA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)13(ta)19 |
|---|---|
| PCR product (bp) | 165 |
| fwd primer | emh11L01/U |
| fwd primer seq. | tgatatcacgcaccaatccttga |
| rev primer | emh11L01/L |
| rev primer seq. | ttattggttcgatttatcggtcgg |
| fluor. primer | emh11L01/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-agatatcacgcaccaatccttga |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 178 | 178 |
| EPL-1 | 172 | 172 |
| LS1151 (S.linneanum) | 134 | 134 |
| LS1934 | 180 | 180 |
| LS4021 (S. incanum) | 124 | 124 |
| Nakate Shinkuro | 174 | 174 |
| Senryo 2 | 172 | 172 |
| Shironasu | 151 | 151 |
| WCGR112-8 | 172 | 172 |
| White Egg | 152 | 152 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_10 | 50.9 |
| LWA2010 | LWA_10 | 48.891 |
| LWAE2012 | E_10 | 54.031 |
| NAF2 | NA10 | 39.7 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0126C20_T7_97287 Chromat_file:LE_HBa_126_C20-T7 SGN_GSS_ID:97287 (vector and quality trimmed) | 6e-10 |
| TomatoBAC_end | BLASTN | LE_HBa0094K05_SP6_27752 Chromat_file:LE_HBa_094_K05-SP6 SGN_GSS_ID:27752 (vector and quality trimmed) | 2e-09 |
| TomatoBAC_end | BLASTN | SL_EcoRI0012L24_SP6_291739 Chromat_file:SL_EcoRI_012_L24-SP6 SGN_GSS_ID:308565 (vector and quality trimmed) | 9e-09 |
| TomatoBAC_end | BLASTN | LE_HBa0091G15_T7_95165 Chromat_file:LE_HBa_091_G15-T7 SGN_GSS_ID:95165 (vector and quality trimmed) | 4e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0224P07_T7_377425 Chromat_file:LE_HBa_224_P07-T7 SGN_GSS_ID:394636 (vector and quality trimmed) | 6e-07 |
| EST Name | Species | Strain |
|---|
