| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_10 |
| Marker Type | SSR |
| Map Position | 80.9 |
| Annotation | |
| Source Name | emh11G06 |
| Source Type | genomic |
| Source Sequence | ATTTCCTAATTTATCTCATAGCCTCGCACTCAAGATAGTG GTGTTGTTCATGGAGGCTTTGATTTTGGGAGAGGAATGGA GGTGAAACGTCACTCTTGGATTTTGCCAAAGCCTTTGATT TAGTTATTGCTAACTCATGTTTCCTAAAGTGGTATATATA TATATATATATATATATATGTGTGTGTGTATGTGTGTGTG TGTGTGTATGTGTAGAAAATTACTAGAATGTAGATATAAT CATCACTTAGCATCAGGCCTCTAAGGGTCACAACCTCACA ACTATTCTGCAATACAACAATTCATAACCTTCACAATTAC AACTATCCACTTAATTACCTTTTGTAGTACAACCTCCACT TAACCAGTTTGGTTGATTAGACAAGCAGAAATCAACTGAA TCCTGTTAATTAATCTCTTCTTCCATTTCTTTACTACTTT GATCAAATCAGTAACAACTAAGCTAGTTCTAAAATTGGCC ACCGTTAAAAAGCAATCAAAACAAAGAGAATTAATTAATA CATGCATTCACAATTTTAAAGAATTATGAGTTATCGAGTT TTACCTTATTTGTTCTTCATGGTTCCCACAACTCTAGTTG TGGATTTAGCTATGCATATTCATTATAGATGCAAAAATCA TGATATGGAATAACATAATGAAGCACTTATAAAGATGAAT TTATGAACAAGAAATTCCAAACTCTTCACAAAAAATCACA AAGTATTGATTAAAATCACAAAGTTGTGTTCCAAGTGTTT CTATGCAGTTCTCTCTTTGTTTCTGGTCGTTCTCCTTCAT TCTCTACCAAAAATAATATAAAAAACACATTTATAATAAC TAAAATACATGTCCAAAAAGAATACGAAAATTGGATTCGG CAAGTAATATGGGCAGGGCTACAGGTCGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)13(tg)5ta(tg)8 |
|---|---|
| PCR product (bp) | 197 |
| fwd primer | emh11G06/U |
| fwd primer seq. | ggaggtgaaacgtcactcttggat |
| rev primer | emh11G06/L |
| rev primer seq. | gttgtgacccttagaggcctgatg |
| fluor. primer | |
| dye | |
| fluor. Primer seq. | |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 200 | 200 |
| EPL-1 | 202 | 202 |
| LS1151 (S.linneanum) | ||
| LS1934 | 202 | 202 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 202 | 202 |
| Senryo 2 | 200 | 200 |
| Shironasu | 192 | 192 |
| WCGR112-8 | 202 | 202 |
| White Egg | 206 | 206 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_10 | 80.9 |
| ALF2 | AL10 | 92.7 |
| LWA2010 | LWA_10 | 67.567 |
| LWAE2012 | E_10 | 72.516 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0101K20_SP6_56966 Chromat_file:LE_HBa_101_K20-SP6 SGN_GSS_ID:56966 (vector and quality trimmed) | 1e-07 |
| TomatoBAC_end | BLASTN | SL_MboI0119I14_SP6_208322 Chromat_file:SL_MboI_119_I14-SP6 SGN_GSS_ID:225148 (vector and quality trimmed) | 5e-07 |
| TomatoBAC_end | BLASTN | SL_MboI0064I06_T7_164922 Chromat_file:SL_MboI_64_I06-T7 SGN_GSS_ID:181748 (vector and quality trimmed) | 5e-07 |
| TomatoBAC_end | BLASTN | LE_HBa0055M04_T7_82375 Chromat_file:LE_HBa_055_M04-T7 SGN_GSS_ID:82375 (vector and quality trimmed) | 5e-07 |
| TomatoBAC_end | BLASTN | SL_EcoRI0003F12_T7_387390 Chromat_file:SL_EcoRI_003_F12-T7 SGN_GSS_ID:404584 (vector and quality trimmed) | 2e-06 |
| EST Name | Species | Strain |
|---|
