| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_10 |
| Marker Type | SSR |
| Map Position | 115.1 |
| Annotation | |
| Source Name | emg01H23 |
| Source Type | genomic |
| Source Sequence | CCCATGCAGAAGTACTCCCTTTGTAGGTCGTAAGCCCATG CTGAAGTATTAACAACTGAACATTAACATATGATAAAGAA AGTAGACATTTTCTACATTGACTGATTTTATTATATTGGT GTAATAGGCAGCTCATTAGCAGTGCTAAACAAACAGCATC TCCAGGAGTAAAAGCTGATTTCCTAAATAAGAGCTATACA TTTGCCTTCAGAAATTCCAATGATTTTCCTAAGGAACAAA CTACTCCTGACCCATAAAGGAAAAGGAGAAAGCTTCTTAT TTAAATTCTGGCAGGAGTAACATTGTCCTGCAACAAAAGC AAATCTAACAGTAACTGATATCAAGCGTTTAGAAGTTTTA ACCATTTTTAAAGAAAAGATTTTGTGTGTGTGTGTGTGTG TGTGTGTGTAGGTTCAGAGTCCAAAAATGGCATTATAGCA GGAGAAAGTAGCAGCAGAGCAAGGTGTTGAAGGGAAATTA AGATCGACCAAACCTCTCCAATAGGCTAATCCATTATTTG GCCAATTCCTTATCACCTCAGTCTTTTTTGGATCCACTTT AATCCCTCCACCCGATACTAAATTTCCTAGAACGACAACT TTCTTCAACTAAAATTCATATTTGTCAAACTTAGCAAACA ACCTTTCTTCCCTCAACTTTTGCAACACTACCCTCATATG TTTTACATGTTCCCCTTCACTCTGAGAATAAATCAAAATA TCATCAATGAAGACCACCACAAACATGTCAAGGTAGGGTT TAATGACCCTATTCGTAAGATTTATAAATATTGCTTGAGC ATTAGTTAGGCCCTACGCTTGGATCATGACACTTAGGCAC AAGACCCTAAGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)13 |
|---|---|
| PCR product (bp) | 292 |
| fwd primer | emg01H23/U |
| fwd primer seq. | tgctaaacaaacagcatctccagg |
| rev primer | emg01H23/L |
| rev primer seq. | aatgccatttttggactctgaacc |
| fluor. primer | emg01H23/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agctaaacaaacagcatctccagg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 291 | 291 |
| EPL-1 | 291 | 291 |
| LS1151 (S.linneanum) | 302 | 302 |
| LS1934 | 287 | 287 |
| LS4021 (S. incanum) | 302 | 302 |
| Nakate Shinkuro | 291 | 291 |
| Senryo 2 | 287 | 291 |
| Shironasu | 287 | 287 |
| WCGR112-8 | 291 | 291 |
| White Egg | 291 | 291 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_10 | 115.1 |
| ALF2 | AL10 | 144.2 |
| LW2010 | E_10 | 108.5 |
| LWA2010 | LWA_10 | 105.014 |
| LWAE2012 | E_10 | 113.969 |
| LWF2_2022 | E_10 | 113.1 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
