| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_10 |
| Marker Type | SSR |
| Map Position | 71.4 |
| Annotation | |
| Source Name | emg01D17 |
| Source Type | genomic |
| Source Sequence | TGTTCACTTGAGAATGATAATTCAAACTTATGGATACTTT TAGTAATTCTTATAACTTATGAATATGAATATATTTTTTT TTTAAAAATAAAATCAAGACTTGTCAAAAATATTTAAAAA TTAGAGTCAAAACTACCTAACTTTTTAGAAAAATAAAAAG ACTAGCTTCCACTCATGTCAATTGTCAGATGCTAATAGCC AAAACACCCCACAAATTTCCACAATAACAAATATCTAGCA TCTACTTTTTTGCATATAATGCTAATACACACACATCTCA AAATAATTTCACCTACCAAGAAACTTCCTTAAAATTCCCA CCGCCGAAACATCACTAAAATCACACACACACACACACAC ACATATCTCCATATTCTCGCTTACTTATCTTCTTTAAAGA TGTCGAGGTCGAGCTCGAAAAATGATGTACACATCCTAAT TTTTCCATTTCCAGCGCAAGGTCACATACTACCCCTTCTT GATTTTACTCATCAACTTCTTCTCCATGGCTTTAAAATCA CCATTTTAGTGACACCCAAAAATGTCCCTATTCTTGATCC TCTTCTTTCCACCCACCCATCACTTGGAATTCTTGATTTT CCGTTTCCCGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)10 |
|---|---|
| PCR product (bp) | 281 |
| fwd primer | emg01D17/U |
| fwd primer seq. | gctaatagccaaaacaccccacaa |
| rev primer | emg01D17/L |
| rev primer seq. | tagtatgtgaccttgcgctggaaa |
| fluor. primer | emg01D17/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-actaatagccaaaacaccccacaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 280 | 280 |
| EPL-1 | 280 | 280 |
| LS1151 (S.linneanum) | 275 | 275 |
| LS1934 | 280 | 280 |
| LS4021 (S. incanum) | 276 | 276 |
| Nakate Shinkuro | 282 | 282 |
| Senryo 2 | 280 | 280 |
| Shironasu | 282 | 282 |
| WCGR112-8 | 282 | 282 |
| White Egg | 282 | 282 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_10 | 71.4 |
| ALF2 | AL10 | 68.7 |
| EW2009 | LG09 | 59.5 |
| LWA2010 | LWA_10 | 64.581 |
| LWAE2012 | E_10 | 64.714 |
| NAF2 | NA10 | 62.3 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
