| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_10 |
| Marker Type | SSR |
| Map Position | 51.0 |
| Annotation | |
| Source Name | emf11B07 |
| Source Type | genomic |
| Source Sequence | CTTATAGCATCAAATTGGAAGAAGAATCAAAAATCAAAAA AAAAAGGGTTACTGTAGCAACCCGAGAGTTGCTACAGTTA AGGGGTGATTTTTTTGGAAAATTTGCTAAGTATGGGAGTG GTCTTGTACAAGGAAGACATACACACACACACACACACAC ACACACACACACACACACACACATATATATATATATATAT ATATACATATATATACATACTTGTCATCCTCACTTGAGTC CTCAAACTCCTTGAAAATACACTTTGGTCCCCAAACTTTT TCTACATAAACCAATTAAGGACACACGAAAGTTCCGAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)21a(ta)11ca(ta)4 |
|---|---|
| PCR product (bp) | 211 |
| fwd primer | emf11B07/U |
| fwd primer seq. | ccgagagttgctacagttaagggg |
| rev primer | emf11B07/L |
| rev primer seq. | ggggaccaaagtgtattttcaagg |
| fluor. primer | emf11B07/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-acgagagttgctacagttaagggg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 215 | 215 |
| EPL-1 | 212 | 212 |
| LS1151 (S.linneanum) | 191 | 191 |
| LS1934 | 217 | 217 |
| LS4021 (S. incanum) | 196 | 196 |
| Nakate Shinkuro | 213 | 213 |
| Senryo 2 | 211 | 213 |
| Shironasu | 214 | 214 |
| WCGR112-8 | 215 | 215 |
| White Egg | 214 | 214 |
| PI 286106 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_10 | 51.0 |
| EW2009 | LG04 | 71.7 |
| LW2010 | E_10 | 47.0 |
| LWA2010 | LWA_10 | 48.864 |
| LWAE2012 | E_10 | 54.066 |
| LWF2_2022 | E_10 | 47.7 |
| N28F2 | E_06 | 48.9 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
