| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_10 |
| Marker Type | SSR |
| Map Position | 43.5 |
| Annotation | |
| Source Name | eme11F10 |
| Source Type | genomic |
| Source Sequence | AGTTCAACCACGATAAACTGATAATCACGGACAACAGTAA TCCTTAGCCTCTAACTCCATAATAATGGGAGATGTCAAAA ATCAGATTTCGACAAGCAGGCTACTCCACCACCACCACCA CCCCCACCTATGCACCCCCAAAAAAGAGAGAGAGCGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAAACTGAGAGATTTTATATTGGCAATATGGAG ATATTTTAGATGCTAAAAGACAATTTAAATGACAATACAG AAAAAGAGATGCCAGGAGTCAAAAAGAAGTTGAAATATCA AGAAGTCATCTTCTCAATCTAGCAATTTCAGAATTACACT CGGGAGAGTAATTAGAAAAACTAGAAGCAAAGGGCAGATT TTCTCAACTAAATCACACCACATTGTTGGTGCTCAGAATT GAAGATTTGCCAAGTAGAACCAACACTAACAACATCCAAT AGTATATCAAACCTTTAAGGTTGAAATTATCAAAAGATTG CGTACCAAGAAACTCTGCAGCATCATTTGGCAAATTCATT ACTACTTGAGTAATTGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)5c(ga)27aact(ga)3 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme11F10/U |
| fwd primer seq. | atttcgacaagcaggctactccac |
| rev primer | eme11F10/L |
| rev primer seq. | tcaacttctttttgactcctggca |
| fluor. primer | eme11F10/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-ATTTCGACAAGCAGGCTACTCCAC |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 225 | 225 |
| EPL-1 | 227 | 227 |
| LS1151 (S.linneanum) | 207 | 207 |
| LS1934 | 229 | 229 |
| LS4021 (S. incanum) | 215 | 215 |
| Nakate Shinkuro | 229 | 229 |
| Senryo 2 | 227 | 229 |
| Shironasu | 227 | 227 |
| WCGR112-8 | 227 | 227 |
| White Egg | 229 | 229 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_10 | 43.5 |
| ALF2 | AL10 | 39.3 |
| LW2010 | E_10 | 41.4 |
| LWA2010 | LWA_10 | 42.163 |
| LWAE2012 | E_10 | 47.134 |
| LWF2_2022 | E_10 | 42.0 |
| N28F2 | E_10 | 18.8 |
| NAF2 | NA10 | 32.9 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
