| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_10 |
| Marker Type | SSR |
| Map Position | 50.5 |
| Annotation | |
| Source Name | emd01C11 |
| Source Type | genomic |
| Source Sequence | ACTGCCCATGTATTATTCAGCTGATGCCATGTACTTCTAG ATGTGAGCTAACTGAGCCTTCTAATTTCTTAATACCAGCT GGAAGTAAAATTGAGCAGGGTAACATCATTGTGTCGTATT ACAAGAACAAACAATATAGATTACAAAATAATAGTGAATA CTCTTATGTCAAACTCTACAACTCACTTTAACATGAAATC TTTTCAAGATTTTCTTTCCATCTAACATACATAGAATCTT TAATTTACATAAAACAAGACTAGAAACAACCATATCTTTT AAATCCCTTAGTGGACCCAAATCGCCAAAGTCGACTAAGG AGGCATTTTCTTGCCCAACCAATACCTCCACGCTACTTAG GGGACCCAGAATAGTAGGTTTATACCCTCAATTTAACTTG GAAATGGAAGAAATAGAATTTCAAGGTTCCCAGGTGGTGG TCGAACCTCTCTGCTTCTTGGTTTCTTATTAGTTTCTAAG AGAAAGTGAAACAAAAAATGATAAGAACAAATTTCTCTTA CATACTCACACACACACACACACACACACACACACACACA CACACACACACACATATATATTCAAGAATATAGCTAGCTT TGCCAAGTGTAATACACTTGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)23a(ta)3 |
|---|---|
| PCR product (bp) | 299 |
| fwd primer | emd01C11/U |
| fwd primer seq. | tcgactaaggaggcattttcttgc |
| rev primer | emd01C11/L |
| rev primer seq. | cacttggcaaagctagctatattcttg |
| fluor. primer | emd01C11/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-acgactaaggaggcattttcttgc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 300 | 300 |
| EPL-1 | 300 | 300 |
| LS1151 (S.linneanum) | ||
| LS1934 | 302 | 302 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 300 | 300 |
| Senryo 2 | 300 | 300 |
| Shironasu | 298 | 298 |
| WCGR112-8 | 302 | 302 |
| White Egg | 298 | 298 |
| PI 286106 | 303 | 303 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_10 | 50.5 |
| EW2009 | LG05 | 43.9 |
| LWA2010 | LWA_10 | 49.265 |
| LWAE2012 | E_10 | 53.427 |
| N28F2 | E_10 | 24.3 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0223M20_T7_401181 Chromat_file:LE_HBa_223_M20-T7 SGN_GSS_ID:418375 (vector and quality trimmed) | 6e-40 |
| EST Name | Species | Strain |
|---|
