| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 52.0 |
| Annotation | |
| Source Name | emj02F08 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNTNNNNNNNNNNNNNNNNNNNNNNNNCCATAAATTCTTG AAATTATCAAAAATATGTACATAAATTTTTATTTTATACA TACATATATATACACACACATACACACACCCATGATAATC AAGAGAGGGAGGGTGAATTGAAAATATATCCATGAATTTT TATTTTATACATACATATACACACACATACACACACCCAT GATATTCAAGAGAGGGAGGGTGAATTGAAAATTTTGCTAG TCGGCTATCCAAGACAGGCAGTTCACTTACTTGCAGGTTA GTTCAATAGAAGATGATGATGATGATGATGATGATGACGA CGACGACGACAATGACGATGACAAATTTTATACTAGTTTG GATCACTGGTGTGGTGCCTAGTCCAATCCTCTTGGTTTAC AAGNNNNNTACTCAGCGGGCATAGGNNNNNNNNNNNNNNN NNNNNNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (gat)8ga(cga)4 |
|---|---|
| PCR product (bp) | 186 |
| fwd primer | emj02F08/U |
| fwd primer seq. | caagagagggagggtgaattgaaa |
| rev primer | emj02F08/L |
| rev primer seq. | agaggattggactaggcaccacac |
| fluor. primer | emj02F08/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atagagagggagggtgaattgaaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 195 | 195 |
| EPL-1 | 192 | 192 |
| LS1151 (S.linneanum) | 203 | 203 |
| LS1934 | 189 | 189 |
| LS4021 (S. incanum) | 204 | 204 |
| Nakate Shinkuro | 192 | 192 |
| Senryo 2 | 192 | 192 |
| Shironasu | 192 | 192 |
| WCGR112-8 | 161 | 161 |
| White Egg | 189 | 189 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 52.0 |
| LWA2010 | LWA_09 | 57.104 |
| LWAE2012 | E_09 | 42.555 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0028N22_T7_233627 Chromat_file:SL_EcoRI_028_N22-T7 SGN_GSS_ID:250453 (vector and quality trimmed) | 8e-08 |
| TomatoBAC_end | BLASTN | SL_MboI0114C16_T7_195892 Chromat_file:SL_MboI_114_C16-T7 SGN_GSS_ID:212718 (vector and quality trimmed) | 8e-08 |
| TomatoBAC_end | BLASTN | SL_MboI0115H05_T7_301623 Chromat_file:SL_MboI_115_H05-T7 SGN_GSS_ID:318449 (vector and quality trimmed) | 5e-06 |
| EST Name | Species | Strain |
|---|
