| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 52.0 |
| Annotation | |
| Source Name | emh11B19 |
| Source Type | genomic |
| Source Sequence | ACCTTGAAATCCATCACAAAAGCTCATAATAGTTCATAGT TTTATAGTTCAAAATATGCATAATCTCAATACACAAAATC AATTCATGAAGTAAGCTTGAAATAGACATTCCTACATGAT CAATCAATACTTTATAAAATCCCAACATAATTGTAATACA TCATCATAAAGGAAAAATATGTATTTTAGACTTTTTTATT TATCCTTCTTGTGTTTAAAAAGAAAAAGAAAAAATATGTC TTTTAGCTTTAGCCCATCTACCGGTAAAAAAAGGAGGTTG TTTGTTGAATCTTCAGCTTATACTCCCACTTAATTTGATA ACGAGTATAAACAAGAGCCAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGCTAGCAATTGTATCACAGC AACCAGGAACAGTGACCAAGAGGAGAAAAAAAATCAAAAG ATGTAAGTTCTAACTAAGGAGAGGAGCAAGGAAGGTAAGT CCTAAACCTAGTTGTAAACTTAATTTGTTTATTTCATAGC TATAGAATTGAGGTTAAGAGTTTAAGAAATCTCCATGGGT TAGAAGAAATAGAGAACAATTTGAAATTTGAGAAGATAAT CCTTTGAATTCTCTTTAAATTAGATGAATGAATGATATGA ATAGGAGAAGTTGATGAATTAGGAATTGTGAAAGTGGTGT AGTCCATATAAAAATCTCCAGAAGTGACTATTAAAAGGAC AACCTGGGAAGCTAGGGTTCGGCATCTTAGAAAAAAAGAT CGTAATCATCACAAACAGTGATTCACTCTAGTTTAGGGCT GATTAATTGATTCTTGCATAAGTTTAGACAAAGAATTGAG TAAATAATTATAAAAATATGCCAAAACGGATGGATTAAGA ACTAGTTGAATTATACATGGTTTGGATATTACATTATATG TCATTAAATGGATAGGAAATAGAAAAAAAAAATCCTAAAA GGGATTGGGAATTTCTAAAGTTAGTATGAACTTATCTTGA ACAAAGAAAGTAACATGAGATTTTATTATATGAAAATAGA TTGACCAAAGGAAGTATTACAGATTGCTTAAGATGACAAG TTTGGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)21 |
|---|---|
| PCR product (bp) | 187 |
| fwd primer | emh11B19/U |
| fwd primer seq. | tcttttagctttagcccatctaccg |
| rev primer | emh11B19/L |
| rev primer seq. | ctcctcttggtcactgttcctggt |
| fluor. primer | emh11B19/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-acttttagctttagcccatctaccg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 189 | 189 |
| EPL-1 | 189 | 189 |
| LS1151 (S.linneanum) | 185 | 185 |
| LS1934 | 189 | 191 |
| LS4021 (S. incanum) | 196 | 196 |
| Nakate Shinkuro | 187 | 187 |
| Senryo 2 | 187 | 189 |
| Shironasu | 189 | 189 |
| WCGR112-8 | 189 | 189 |
| White Egg | 189 | 189 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 52.0 |
| ALF2 | AL09 | 69.6 |
| LW2010 | E_09 | 58.8 |
| LWA2010 | LWA_09 | 57.76 |
| LWAE2012 | E_09 | 42.126 |
| LWF2_2022 | E_09 | 65.8 |
| NAF2 | NA09 | 54.4 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
