| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 50.4 |
| Annotation | |
| Source Name | emh05E02 |
| Source Type | genomic |
| Source Sequence | CTATAAATTGTCATAATTTTTGTATTAGAAGCATAAATCA ATTTTGCTTCTTTCTATCTTCCATAGAGATGTGATACTTT TATAATCTTTTAACATTCTCAGTTAAATTCTATGTAATTA TTTAATCACTATATACGATCTGTGTCTCAGATTTCTATTG AATTATTTTCTCTCTTAAAAATGATTGTTTTCCTACTTGG GGAATACTTCATTTTGCAACTTTCCAGGTTAACTTTTTCT GTAATAACCCTTATATTTTTTAATGAAGGATTAATTGGGT AATTTTAACCATTAATAATTCTTATTAAAAGAATTTAAAA AAAAAGGGCCCAACCCCTTTTATTTTAATTCTCACGCAGT AAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAAGCACTAGTTCTCTTCAAATCAATC ACTACAGAGATAAAAAAAAAGGTTAGGCAGATTTTCATCC CTTTCTTTTGGAAGAAAACACGCGAATTATCAAGGTGATT CAGGAAACTCATACATAGAATCAATTTGATCTTTGAACCA CTAAATTAGGTGATAAACCATAGGTATTTTCTTCTTGTTG TGTACTTTTGTTAGTAGAAATATCTACCAGAATTTTCACC AACTAGGTTTAACAATAAGATTAAGAATACTTTTACTTAT AATTCATAGTCTAAGGTATTGTGTATTATGGTTTAACCCT AAAGTTAGGAATAGTAAGACTTGAGTTTGTCCAACATAAT TGATATCGGTAATCACTATTTTTCATAGATTGAGGCAAGT AAGGGCTATTTTGGTGGGTGTTCTACGCGTGCAAGGTTGT GAAACTTGTCATTAATAAGGTAAGTGAGACTTTAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)24 |
|---|---|
| PCR product (bp) | 161 |
| fwd primer | emh05E02/U |
| fwd primer seq. | aagggcccaaccccttttatttta |
| rev primer | emh05E02/L |
| rev primer seq. | aaagggatgaaaatctgcctaacc |
| fluor. primer | emh05E02/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atgggcccaaccccttttatttta |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 168 | 168 |
| EPL-1 | 167 | 167 |
| LS1151 (S.linneanum) | 142 | 142 |
| LS1934 | 163 | 163 |
| LS4021 (S. incanum) | 159 | 159 |
| Nakate Shinkuro | 168 | 168 |
| Senryo 2 | 169 | 169 |
| Shironasu | 168 | 168 |
| WCGR112-8 | 162 | 162 |
| White Egg | 163 | 163 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 50.4 |
| ALF2 | AL09 | 58.5 |
| LW2010 | E_09 | 56.0 |
| LWA2010 | LWA_09 | 56.183 |
| LWAE2012 | E_09 | 41.196 |
| LWF2_2022 | E_09 | 59.0 |
| NAF2 | NA09 | 52.7 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0097M21_SP6_309800 Chromat_file:SL_EcoRI_097_M21-SP6 SGN_GSS_ID:326626 (vector and quality trimmed) | 6e-13 |
| EST Name | Species | Strain |
|---|
